View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5851-3 (Length: 136)

Name: Solexa-NF5851-3
Description: NF5851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5851-3
Solexa-NF5851-3
[»] chr1 (8 HSPs)
chr1 (81-136)||(42697798-42697853)
chr1 (81-136)||(45755534-45755589)
chr1 (94-134)||(24727383-24727423)
chr1 (85-135)||(13302917-13302967)
chr1 (88-136)||(42913063-42913111)
chr1 (97-136)||(12327742-12327781)
chr1 (93-128)||(14792558-14792593)
chr1 (93-128)||(38887082-38887117)
[»] scaffold0075 (1 HSPs)
scaffold0075 (81-136)||(60909-60964)
[»] chr8 (9 HSPs)
chr8 (81-136)||(19700175-19700230)
chr8 (85-136)||(23948277-23948328)
chr8 (81-132)||(22583643-22583694)
chr8 (94-136)||(23419455-23419497)
chr8 (87-136)||(17906838-17906887)
chr8 (85-135)||(36727025-36727075)
chr8 (85-135)||(45469206-45469256)
chr8 (87-135)||(22254781-22254829)
chr8 (93-136)||(4380612-4380655)
[»] chr7 (15 HSPs)
chr7 (81-136)||(10658834-10658889)
chr7 (87-136)||(47974809-47974858)
chr7 (87-136)||(12754601-12754650)
chr7 (87-136)||(36704560-36704609)
chr7 (87-135)||(4071835-4071883)
chr7 (87-135)||(15289120-15289168)
chr7 (87-135)||(18955345-18955393)
chr7 (87-135)||(32160189-32160237)
chr7 (87-135)||(35771430-35771478)
chr7 (85-135)||(14218882-14218932)
chr7 (87-128)||(15119296-15119337)
chr7 (88-128)||(14318094-14318134)
chr7 (87-135)||(18990862-18990910)
chr7 (88-135)||(15624033-15624080)
chr7 (81-136)||(33002167-33002222)
[»] chr6 (9 HSPs)
chr6 (81-136)||(12041603-12041658)
chr6 (87-128)||(31734729-31734770)
chr6 (88-136)||(15998903-15998951)
chr6 (81-136)||(24550151-24550206)
chr6 (96-128)||(7217242-7217274)
chr6 (85-133)||(23501689-23501737)
chr6 (87-135)||(31731893-31731941)
chr6 (97-128)||(1818974-1819005)
chr6 (97-136)||(28948589-28948628)
[»] chr4 (11 HSPs)
chr4 (81-136)||(21210-21265)
chr4 (81-136)||(32466177-32466232)
chr4 (81-136)||(15613104-15613159)
chr4 (85-136)||(51993575-51993626)
chr4 (93-136)||(2424382-2424425)
chr4 (85-135)||(14186067-14186117)
chr4 (85-131)||(19739757-19739803)
chr4 (85-114)||(13847237-13847266)
chr4 (88-136)||(14549774-14549822)
chr4 (87-135)||(21062656-21062704)
chr4 (88-135)||(9924169-9924216)
[»] chr2 (7 HSPs)
chr2 (81-136)||(5986191-5986246)
chr2 (81-136)||(25046132-25046187)
chr2 (81-135)||(14694341-14694395)
chr2 (81-135)||(44072572-44072626)
chr2 (85-121)||(19358920-19358956)
chr2 (1-33)||(25046235-25046267)
chr2 (93-136)||(19201195-19201238)
[»] scaffold0671 (1 HSPs)
scaffold0671 (81-136)||(4954-5009)
[»] scaffold0077 (1 HSPs)
scaffold0077 (81-136)||(5964-6019)
[»] scaffold0002 (1 HSPs)
scaffold0002 (81-132)||(398580-398631)
[»] scaffold0589 (1 HSPs)
scaffold0589 (81-136)||(4399-4454)
[»] scaffold0042 (1 HSPs)
scaffold0042 (85-136)||(29402-29453)
[»] chr3 (4 HSPs)
chr3 (94-136)||(12509346-12509388)
chr3 (87-136)||(16050941-16050990)
chr3 (87-135)||(11885546-11885594)
chr3 (97-128)||(3160626-3160657)
[»] scaffold0083 (2 HSPs)
scaffold0083 (81-136)||(5028-5083)
scaffold0083 (81-136)||(10738-10793)
[»] chr5 (10 HSPs)
chr5 (85-136)||(25249815-25249866)
chr5 (85-136)||(25313599-25313650)
chr5 (87-128)||(26762424-26762465)
chr5 (85-136)||(6551277-6551328)
chr5 (94-136)||(10954103-10954145)
chr5 (87-121)||(21405617-21405651)
chr5 (87-131)||(21914481-21914525)
chr5 (88-136)||(36508623-36508671)
chr5 (93-128)||(1626913-1626948)
chr5 (93-128)||(26750053-26750088)
[»] scaffold0065 (2 HSPs)
scaffold0065 (82-136)||(52528-52582)
scaffold0065 (85-131)||(55960-56006)
[»] scaffold0371 (2 HSPs)
scaffold0371 (87-128)||(10435-10476)
scaffold0371 (87-127)||(3897-3937)
[»] scaffold0220 (1 HSPs)
scaffold0220 (87-135)||(19969-20017)
[»] scaffold0123 (1 HSPs)
scaffold0123 (85-136)||(7291-7342)
[»] scaffold0020 (1 HSPs)
scaffold0020 (87-128)||(174243-174284)
[»] scaffold0625 (1 HSPs)
scaffold0625 (87-135)||(5850-5898)
[»] scaffold0334 (1 HSPs)
scaffold0334 (88-136)||(532-580)
[»] scaffold0151 (1 HSPs)
scaffold0151 (87-131)||(31127-31171)
[»] scaffold0439 (1 HSPs)
scaffold0439 (93-128)||(4443-4478)
[»] scaffold0401 (1 HSPs)
scaffold0401 (93-128)||(8843-8878)
[»] scaffold0125 (1 HSPs)
scaffold0125 (97-128)||(7225-7256)
[»] scaffold0113 (1 HSPs)
scaffold0113 (97-136)||(35504-35543)
[»] scaffold0048 (1 HSPs)
scaffold0048 (93-128)||(56995-57030)
[»] scaffold0039 (1 HSPs)
scaffold0039 (93-128)||(9923-9958)
[»] scaffold0032 (1 HSPs)
scaffold0032 (97-136)||(61847-61886)
[»] scaffold0008 (1 HSPs)
scaffold0008 (88-135)||(135494-135541)
[»] scaffold0001 (1 HSPs)
scaffold0001 (97-136)||(77701-77740)


Alignment Details
Target: chr1 (Bit Score: 52; Significance: 3e-21; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 42697853 - 42697798
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42697853 cttgcaatcgattaacctaaggtaagggtgagactaaccttctttaattctaagtt 42697798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 45755589 - 45755534
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  45755589 cttgcaatcgattaacctaaggtaagggtgagactaaccttctttaattataagtt 45755534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 24727423 - 24727383
Alignment:
Q  94 aacctaaggtaagggtgagacaaaccttctttaattctaag 134  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  24727423 aacctaaggtaagggtgggactaaccttctttaattctaag 24727383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 13302967 - 13302917
Alignment:
Q  85 caatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    |||||||| || |||||||||||||||||| ||| |||| |||||||||||    
T  13302967 caatcgatcaatctaaggtaagggtgagactaactttctctaattctaagt 13302917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 42913111 - 42913063
Alignment:
Q  88 tcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    ||||| || |||||||||||||||||| ||| |||| ||||||||||||    
T  42913111 tcgatcaatctaaggtaagggtgagactaactttctctaattctaagtt 42913063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 12327742 - 12327781
Alignment:
Q  97 ctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||| ||| |||| ||||||||||||    
T  12327742 ctaaggtaagggtgagactaactttctctaattctaagtt 12327781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 14792558 - 14792593
Alignment:
Q  93 taacctaaggtaagggtgagacaaaccttctttaat 128  Q
    |||||||||||||||||| ||| |||||||||||||    
T  14792558 taacctaaggtaagggtgggactaaccttctttaat 14792593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 38887082 - 38887117
Alignment:
Q  93 taacctaaggtaagggtgagacaaaccttctttaat 128  Q
    ||||||||||||||||||| || |||||||||||||    
T  38887082 taacctaaggtaagggtgaaactaaccttctttaat 38887117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 48; Significance: 8e-19; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 60964 - 60909
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  60964 cttgcaatcgattaacctaaggtaaggatgagactaaccttctttaattctaagtt 60909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 8e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 19700230 - 19700175
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  19700230 cttgcaatcgattaacctaaggtaagggtgggactaaccttctttaattctaagtt 19700175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 23948328 - 23948277
Alignment:
Q  85 caatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    ||||||||||||||||||||||||||  || |||||||||||||||||||||    
T  23948328 caatcgattaacctaaggtaagggtggtactaaccttctttaattctaagtt 23948277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 22583643 - 22583694
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattcta 132  Q
    |||||||||||||||||||||||||||||| ||  ||| |||||||||||||    
T  22583643 cttgcaatcgattaacctaaggtaagggtgggattaacattctttaattcta 22583694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 23419497 - 23419455
Alignment:
Q  94 aacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    ||||||||||||||||| ||| |||||||||||||||||||||    
T  23419497 aacctaaggtaagggtgggactaaccttctttaattctaagtt 23419455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 17906838 - 17906887
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||||||||| ||| ||| |||| ||||||||||||    
T  17906838 atcgattaacctaaggtaagggtgggactaactttctctaattctaagtt 17906887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 36727025 - 36727075
Alignment:
Q  85 caatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    |||||||| || |||||||||||||||||| ||| |||| |||||||||||    
T  36727025 caatcgatcaatctaaggtaagggtgagactaactttctctaattctaagt 36727075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 45469206 - 45469256
Alignment:
Q  85 caatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    |||||||| || |||||||||||||||||| ||| |||| |||||||||||    
T  45469206 caatcgatcaatctaaggtaagggtgagactaactttctctaattctaagt 45469256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 22254829 - 22254781
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    ||||||||||||||||||| |||| ||| ||| |||| |||||||||||    
T  22254829 atcgattaacctaaggtaatggtgggactaactttctctaattctaagt 22254781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 4380612 - 4380655
Alignment:
Q  93 taacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||| ||| ||| |||| ||||||||||||    
T  4380612 taacctaaggtaagggtgggactaactttctctaattctaagtt 4380655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 8e-19; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 10658834 - 10658889
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  10658834 cttgcaatcgattaacctaaggtaagggtgggactaaccttctttaattctaagtt 10658889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 47974809 - 47974858
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||||||||    
T  47974809 atcgattaacctaaggtaagggtgagactaactttctctaattctaagtt 47974858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 12754601 - 12754650
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||||||||| ||| ||| |||| ||||||||||||    
T  12754601 atcgattaacctaaggtaagggtgggactaactttctctaattctaagtt 12754650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 36704560 - 36704609
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    ||||||||| |||||||||||||| ||| |||||||||||||| ||||||    
T  36704560 atcgattaatctaaggtaagggtgggactaaccttctttaattttaagtt 36704609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 4071883 - 4071835
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    |||||||||||||||||||||||| ||| ||| |||| |||||||||||    
T  4071883 atcgattaacctaaggtaagggtgggactaactttctctaattctaagt 4071835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 15289168 - 15289120
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    |||||||||||||||||||||||| ||| ||| |||| |||||||||||    
T  15289168 atcgattaacctaaggtaagggtgggaccaactttctctaattctaagt 15289120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 18955393 - 18955345
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    ||||||||||||||||||| |||||||| ||| |||| |||||||||||    
T  18955393 atcgattaacctaaggtaaaggtgagactaactttctctaattctaagt 18955345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 32160189 - 32160237
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    ||||||||||||||||||||||| |||| ||| |||| |||||||||||    
T  32160189 atcgattaacctaaggtaagggtaagactaactttctctaattctaagt 32160237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 35771430 - 35771478
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    |||||||||||||||||||||||| ||| ||| |||| |||||||||||    
T  35771430 atcgattaacctaaggtaagggtgggactaactttctctaattctaagt 35771478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 14218882 - 14218932
Alignment:
Q  85 caatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    |||||||| || |||||||||||||||||| ||| |||| |||||||||||    
T  14218882 caatcgatcaatctaaggtaagggtgagactaactttctctaattctaagt 14218932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 15119296 - 15119337
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaat 128  Q
    |||||||||||||||||||||||  ||| |||||||||||||    
T  15119296 atcgattaacctaaggtaagggtaggactaaccttctttaat 15119337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 14318134 - 14318094
Alignment:
Q  88 tcgattaacctaaggtaagggtgagacaaaccttctttaat 128  Q
    ||||| || |||||||||||||| |||||||||||||||||    
T  14318134 tcgatcaatctaaggtaagggtgggacaaaccttctttaat 14318094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 18990910 - 18990862
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    ||||||||||||||||||| ||||| || ||| |||| |||||||||||    
T  18990910 atcgattaacctaaggtaaaggtgatactaactttctctaattctaagt 18990862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 15624080 - 15624033
Alignment:
Q  88 tcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    ||||| || |||||||||||||||||| |||||||  |||||||||||    
T  15624080 tcgatcaatctaaggtaagggtgagactaaccttcaataattctaagt 15624033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 33002222 - 33002167
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    ||||||||||| |||| ||||||||||||  ||| ||| |||| ||||||||||||    
T  33002222 cttgcaatcgactaacttaaggtaagggtcggactaactttctctaattctaagtt 33002167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 8e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 12041603 - 12041658
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  12041603 cttgcaatcgattaacctaaggtaagggtgggactaaccttctttaattctaagtt 12041658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 31734770 - 31734729
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaat 128  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  31734770 atcgattaacctaaggtaagggtgggactaaccttctttaat 31734729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 15998951 - 15998903
Alignment:
Q  88 tcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    ||||||| ||||||||||||||||||| ||| |||| ||||||||||||    
T  15998951 tcgattatcctaaggtaagggtgagactaactttctctaattctaagtt 15998903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 24550151 - 24550206
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||| || |||||||||||||||||| ||| || ||||||||||| ||||||    
T  24550151 cttgcaattgactaacctaaggtaagggtgggactaaacttctttaattgtaagtt 24550206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 7217242 - 7217274
Alignment:
Q  96 cctaaggtaagggtgagacaaaccttctttaat 128  Q
    ||||||||||||||||||| |||||||||||||    
T  7217242 cctaaggtaagggtgagactaaccttctttaat 7217274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 23501737 - 23501689
Alignment:
Q  85 caatcgattaacctaaggtaagggtgagacaaaccttctttaattctaa 133  Q
    |||||||| || |||||||||||||||||| |||||||  |||||||||    
T  23501737 caatcgatcaatctaaggtaagggtgagactaaccttcaataattctaa 23501689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 31731893 - 31731941
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    |||||||||||||||||||||||| ||| ||| ||||  ||||||||||    
T  31731893 atcgattaacctaaggtaagggtgggactaactttctccaattctaagt 31731941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 128
Target Start/End: Complemental strand, 1819005 - 1818974
Alignment:
Q  97 ctaaggtaagggtgagacaaaccttctttaat 128  Q
    |||||||||||||||||| |||||||||||||    
T  1819005 ctaaggtaagggtgagactaaccttctttaat 1818974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 28948628 - 28948589
Alignment:
Q  97 ctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||| ||| |||| ||||||||||||    
T  28948628 ctaaggtaagggtgagactaactttctctaattctaagtt 28948589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 8e-19; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 21265 - 21210
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  21265 cttgcaatcgattaacctaaggtaaggatgagactaaccttctttaattctaagtt 21210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 32466177 - 32466232
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  32466177 cttgcaatcgattaacctaaggtaagggtgagactaatcttctttaattctaagtt 32466232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 15613159 - 15613104
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||    
T  15613159 cttgcaattgattaacctaaggtaagggtgggactaaccttctttaattctaagtt 15613104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 51993626 - 51993575
Alignment:
Q  85 caatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  51993626 caatcgattaacctaaggtaagggtgggactaaccttctttaattctaagtt 51993575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 2424382 - 2424425
Alignment:
Q  93 taacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||||||| ||| |||| ||||||||||||    
T  2424382 taacctaaggtaagggtgagactaactttctctaattctaagtt 2424425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 14186117 - 14186067
Alignment:
Q  85 caatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    ||||||| |||||||||||||||||| ||  ||| ||||||||||||||||    
T  14186117 caatcgactaacctaaggtaagggtgggagtaactttctttaattctaagt 14186067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 19739803 - 19739757
Alignment:
Q  85 caatcgattaacctaaggtaagggtgagacaaaccttctttaattct 131  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||    
T  19739803 caatcgattatcctaaggtaagggtgagactaaccttcaataattct 19739757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 13847266 - 13847237
Alignment:
Q  85 caatcgattaacctaaggtaagggtgagac 114  Q
    ||||||||||||||||||||||||||||||    
T  13847266 caatcgattaacctaaggtaagggtgagac 13847237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 14549822 - 14549774
Alignment:
Q  88 tcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    ||||| || |||||||||||||||||| ||| |||| ||||||||||||    
T  14549822 tcgatcaatctaaggtaagggtgagactaactttctctaattctaagtt 14549774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 21062704 - 21062656
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    |||||||| ||||||||||||||| ||| ||| |||| |||||||||||    
T  21062704 atcgattagcctaaggtaagggtgggactaactttctctaattctaagt 21062656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 9924216 - 9924169
Alignment:
Q  88 tcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    ||||| || |||||||||||||||||| ||| |||| |||||||||||    
T  9924216 tcgatcaatctaaggtaagggtgagactaactttctctaattctaagt 9924169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 8e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 5986246 - 5986191
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  5986246 cttgcaatcgattaacctaaggtaagggtgggacgaaccttctttaattctaagtt 5986191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 25046187 - 25046132
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  25046187 cttgcaatcgattaacctaaggtaagggtgggactaaccttctttaattctaagtt 25046132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 14694395 - 14694341
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    ||||||||||||||| |||||||||||||||||| ||| |||| |||||||||||    
T  14694395 cttgcaatcgattaatctaaggtaagggtgagactaactttctataattctaagt 14694341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 44072626 - 44072572
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    ||||| |||||| ||||||||||||||||||||| ||| |||  |||||||||||    
T  44072626 cttgcgatcgatcaacctaaggtaagggtgagactaactttcactaattctaagt 44072572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 19358956 - 19358920
Alignment:
Q  85 caatcgattaacctaaggtaagggtgagacaaacctt 121  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  19358956 caatcgattaacctaaggtaagggtgggactaacctt 19358920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 25046267 - 25046235
Alignment:
Q  1 gtcaaaatagtttttaagtgaaacaagtttttg 33  Q
    |||| ||||||||||||||||||||||||||||    
T  25046267 gtcagaatagtttttaagtgaaacaagtttttg 25046235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 19201195 - 19201238
Alignment:
Q  93 taacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    ||||||||| |||||||||||| ||| |||| ||||||||||||    
T  19201195 taacctaagttaagggtgagactaactttctctaattctaagtt 19201238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 5009 - 4954
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  5009 cttggaatcgattaacctaaggtaagggtgggactaaccttctttaattctaagtt 4954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 6019 - 5964
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    ||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||    
T  6019 cttgcaatcaattaacctaaggtaagggtgggactaaccttctttaattctaagtt 5964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 398631 - 398580
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattcta 132  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  398631 cttgcaatcgattaacctaaggtaagggtgggactaaccttctttaattcta 398580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0589 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 4454 - 4399
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    ||||||||||||||||||||||||| | || ||| |||||||||||||||||||||    
T  4454 cttgcaatcgattaacctaaggtaacgatgggactaaccttctttaattctaagtt 4399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 29453 - 29402
Alignment:
Q  85 caatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||||||||||| ||| || ||||||||||||||||||    
T  29453 caatcgattaacctaaggtaagggtgggactaatcttctttaattctaagtt 29402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 12509346 - 12509388
Alignment:
Q  94 aacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  12509346 aacctaaggtaagggtgggacaaaccttctttaattctaagtt 12509388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 16050990 - 16050941
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||||||||| ||| ||| |||| ||||||||||||    
T  16050990 atcgattaacctaaggtaagggtgggactaactttctctaattctaagtt 16050941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 11885546 - 11885594
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    ||||||||||||| |||||||||| ||| ||| |||| |||||||||||    
T  11885546 atcgattaacctatggtaagggtgggactaactttctctaattctaagt 11885594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 128
Target Start/End: Original strand, 3160626 - 3160657
Alignment:
Q  97 ctaaggtaagggtgagacaaaccttctttaat 128  Q
    |||||||||||||||||| |||||||||||||    
T  3160626 ctaaggtaagggtgagactaaccttctttaat 3160657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 36; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 5028 - 5083
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    ||||||||||| |||||||||||||||||| ||| ||| |||| ||||||||||||    
T  5028 cttgcaatcgactaacctaaggtaagggtgggactaactttctctaattctaagtt 5083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 10738 - 10793
Alignment:
Q  81 cttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    ||||||||||| |||||||||||||||||| ||| ||| |||| ||||||||||||    
T  10738 cttgcaatcgactaacctaaggtaagggtgggactaactttctctaattctaagtt 10793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 25249815 - 25249866
Alignment:
Q  85 caatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||||||||||  ||| |||||||||||||| ||||||    
T  25249815 caatcgattaacctaaggtaagggtaggactaaccttctttaattttaagtt 25249866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 25313599 - 25313650
Alignment:
Q  85 caatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||||||||||  ||| |||||||||||||| ||||||    
T  25313599 caatcgattaacctaaggtaagggtaggactaaccttctttaattttaagtt 25313650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 26762465 - 26762424
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaat 128  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  26762465 atcgattaacctaaggtaagggtgggactaaccttctttaat 26762424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 6551277 - 6551328
Alignment:
Q  85 caatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||| || |||||||||||||||||| ||| |||| ||||||||||||    
T  6551277 caatcgatcaatctaaggtaagggtgagactaactttctctaattctaagtt 6551328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 10954145 - 10954103
Alignment:
Q  94 aacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||    
T  10954145 aacctaaggtaagggtgggactaaccttccttaattctaagtt 10954103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 121
Target Start/End: Original strand, 21405617 - 21405651
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaacctt 121  Q
    |||||||||||||||||||||||||||| ||||||    
T  21405617 atcgattaacctaaggtaagggtgagactaacctt 21405651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 21914481 - 21914525
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaattct 131  Q
    |||||||||||||||||||||||| ||| |||||||  |||||||    
T  21914481 atcgattaacctaaggtaagggtgggactaaccttcaataattct 21914525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 36508623 - 36508671
Alignment:
Q  88 tcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    ||||||||  ||||||||||||||||| ||| |||| ||||||||||||    
T  36508623 tcgattaatttaaggtaagggtgagactaactttctctaattctaagtt 36508671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 1626913 - 1626948
Alignment:
Q  93 taacctaaggtaagggtgagacaaaccttctttaat 128  Q
    |||||||||||||||||| ||| |||||||||||||    
T  1626913 taacctaaggtaagggtgtgactaaccttctttaat 1626948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 128
Target Start/End: Complemental strand, 26750088 - 26750053
Alignment:
Q  93 taacctaaggtaagggtgagacaaaccttctttaat 128  Q
    |||||||||||||||||||||| |||||| ||||||    
T  26750088 taacctaaggtaagggtgagactaaccttttttaat 26750053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 35; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 52528 - 52582
Alignment:
Q  82 ttgcaatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||| ||||||||||||| |||||||| ||| ||||||| |||||||||||||    
T  52528 ttgcaaacgattaacctaagataagggtgggactaaccttcattaattctaagtt 52582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 56006 - 55960
Alignment:
Q  85 caatcgattaacctaaggtaagggtgagacaaaccttctttaattct 131  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||    
T  56006 caatcgattatcctaaggtaagggtgagactaaccttcaataattct 55960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 34; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 10435 - 10476
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaat 128  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  10435 atcgattaacctaaggtaagggtgggactaaccttctttaat 10476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 3937 - 3897
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaa 127  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  3937 atcgattaacctaaggtaagggtgtgaccaaccttctttaa 3897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 20017 - 19969
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    |||||||||||||||||||||||| ||| ||| |||| |||||||||||    
T  20017 atcgattaacctaaggtaagggtgggactaactttctctaattctaagt 19969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 7342 - 7291
Alignment:
Q  85 caatcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||| |||||||||||||| |||||| ||| ||| |||||||||||||||||    
T  7342 caattgattaacctaaggtgagggtgggactaacattctttaattctaagtt 7291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 174284 - 174243
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaat 128  Q
    |||||||||||||| ||||||||| ||| |||||||||||||    
T  174284 atcgattaacctaaagtaagggtgggactaaccttctttaat 174243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0625 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 5850 - 5898
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    ||||||||||||||||||| ||||| || ||| |||| |||||||||||    
T  5850 atcgattaacctaaggtaaaggtgatactaactttctctaattctaagt 5898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 580 - 532
Alignment:
Q  88 tcgattaacctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    ||||| || |||||||||||||||||| ||| |||| ||||||||||||    
T  580 tcgatcaatctaaggtaagggtgagactaactttctctaattctaagtt 532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 31171 - 31127
Alignment:
Q  87 atcgattaacctaaggtaagggtgagacaaaccttctttaattct 131  Q
    |||||||||||||||||||||||| ||| |||||||  |||||||    
T  31171 atcgattaacctaaggtaagggtgggactaaccttcaataattct 31127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0439 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 128
Target Start/End: Complemental strand, 4478 - 4443
Alignment:
Q  93 taacctaaggtaagggtgagacaaaccttctttaat 128  Q
    |||||||||||||||||| ||| |||||||||||||    
T  4478 taacctaaggtaagggtgggactaaccttctttaat 4443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 128
Target Start/End: Complemental strand, 8878 - 8843
Alignment:
Q  93 taacctaaggtaagggtgagacaaaccttctttaat 128  Q
    |||||||||||||||||| ||| |||||||||||||    
T  8878 taacctaaggtaagggtgggactaaccttctttaat 8843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 128
Target Start/End: Original strand, 7225 - 7256
Alignment:
Q  97 ctaaggtaagggtgagacaaaccttctttaat 128  Q
    |||||||||||||||||| |||||||||||||    
T  7225 ctaaggtaagggtgagactaaccttctttaat 7256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 35543 - 35504
Alignment:
Q  97 ctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||| ||| |||| ||||||||||||    
T  35543 ctaaggtaagggtgagactaactttctctaattctaagtt 35504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 128
Target Start/End: Complemental strand, 57030 - 56995
Alignment:
Q  93 taacctaaggtaagggtgagacaaaccttctttaat 128  Q
    |||||||||||||||||| ||| |||||||||||||    
T  57030 taacctaaggtaagggtgggactaaccttctttaat 56995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 9923 - 9958
Alignment:
Q  93 taacctaaggtaagggtgagacaaaccttctttaat 128  Q
    |||||||||||||||||| ||| |||||||||||||    
T  9923 taacctaaggtaagggtgggactaaccttctttaat 9958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 61847 - 61886
Alignment:
Q  97 ctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||| ||| |||| ||||||||||||    
T  61847 ctaaggtaagggtgagactaactttctctaattctaagtt 61886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 135494 - 135541
Alignment:
Q  88 tcgattaacctaaggtaagggtgagacaaaccttctttaattctaagt 135  Q
    ||||| ||||||||||||||||| ||| |||||||  |||||||||||    
T  135494 tcgatcaacctaaggtaagggtgggactaaccttcactaattctaagt 135541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 77740 - 77701
Alignment:
Q  97 ctaaggtaagggtgagacaaaccttctttaattctaagtt 136  Q
    |||||||||||||||||| ||| |||| ||||||||||||    
T  77740 ctaaggtaagggtgagactaactttctctaattctaagtt 77701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University