View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5851-4 (Length: 131)
Name: Solexa-NF5851-4
Description: NF5851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5851-4 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 2e-62; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 15610748 - 15610876
Alignment:
| Q |
3 |
agacaagtattttgtgagatcaacagtctcacgaacaccccatcttaaatcaaataagtattttgtgagatcaacgatctcttcacaatcatgtgaaacc |
102 |
Q |
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| T |
15610748 |
agacaagtattttgtgagatcaacagtctcacgaacaccccatcttaaatcagataagtattttgtgagatcaacgatctcttcacaatcatgtgaaacc |
15610847 |
T |
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| Q |
103 |
cttttctgaacctccttctcccatctctt |
131 |
Q |
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| T |
15610848 |
cttttctgaacctccttctcacatctctt |
15610876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 15610538 - 15610618
Alignment:
| Q |
3 |
agacaagtattttgtgagatcaacagtctcacgaacaccccatcttaaatcaaataagtattttgtgagatcaacgatctc |
83 |
Q |
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| T |
15610538 |
agacaagtattttgtgagatcaacagtctcacgaactccccatcttagatcagataaatattttgtgagatcaacgatctc |
15610618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 15610643 - 15610723
Alignment:
| Q |
3 |
agacaagtattttgtgagatcaacagtctcacgaacaccccatcttaaatcaaataagtattttgtgagatcaacgatctc |
83 |
Q |
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| T |
15610643 |
agacaagtattttgtgagatcaacagtctcacgagctccccatcttagatcagataaatattttgtgagatcaacgatctc |
15610723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 15610701 - 15610771
Alignment:
| Q |
10 |
tattttgtgagatcaacagtctcacga---acaccccatcttaaatcaaataagtattttgtgagatcaac |
77 |
Q |
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| T |
15610701 |
tattttgtgagatcaacgatctcacgacgaacaccccatcgtagctcagacaagtattttgtgagatcaac |
15610771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 15610484 - 15610561
Alignment:
| Q |
3 |
agacaagtattttgtgagatcaacagtctc---acgaacaccccatcttaaatcaaataagtattttgtgagatcaac |
77 |
Q |
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| T |
15610484 |
agacaagtattttgtgaggtcaaccatctcacgacgaacaccccatcgcagctcagacaagtattttgtgagatcaac |
15610561 |
T |
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