View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5852-1 (Length: 309)
Name: Solexa-NF5852-1
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5852-1 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 41702973 - 41703288
Alignment:
| Q |
5 |
taaaattggagaattggaggaaacagtaaagaagaatttggcaacgatgaatgagttgaggaatgaaagcaggaaattgacagaggagaagtgcgaagtg |
104 |
Q |
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| T |
41702973 |
taaaattggagaattggaggaaacagtaaagaagaatttggcaacgatgaatgagttgaggaatgaaagcaggaaattgacagaggagaagtgcgaagtg |
41703072 |
T |
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| Q |
105 |
gagatattacttaaggctttgaagaggaagaggaagtttattcgagtgcgtgaaagagcagcaacattggaggaagatatcatacttttgacaagcttag |
204 |
Q |
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| T |
41703073 |
gagatattacttaaggctttgaagaggaacaggaagtttattcgagtgggtgaaagagcagcaacatcggaggaagatatcatacttttgacaagcttag |
41703172 |
T |
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| Q |
205 |
aagaggaagttcctatg---------------------gttggtgacaacgagttcagaaatgaagatgcctatcacactcttggagtttctggtagtag |
283 |
Q |
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| T |
41703173 |
aagaggaagttcctatggttgatcattttgaagagaatgttggtgacaacgagttcagaaatgaagatgcctatcacactcttggagttgctggtagtag |
41703272 |
T |
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| Q |
284 |
gagatgcctatcatca |
299 |
Q |
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| T |
41703273 |
gagatgcctatcatca |
41703288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 41469579 - 41469392
Alignment:
| Q |
1 |
agattaaaattggagaattggaggaaacagtaaagaagaatttggcaacgatgaatgagttgaggaatgaaagcaggaaattgacagaggagaagtgcga |
100 |
Q |
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| T |
41469579 |
agattaaaaatgatgaattgaaggaaacagcaaagaagaatttggtaatgatgagtgacttgaggcatgaaagcaggaaattggcagaggagaagcgcga |
41469480 |
T |
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| Q |
101 |
agtggagatattacttaaggctttgaagaggaagaggaagtttattcgagtgcgtgaaagagcagcaacattggaggaagatatcatacttttg |
194 |
Q |
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| T |
41469479 |
agccgagacattacttgaggctttgaagag------gaagtttattcgactgcgtgaaagagtaacaacgttggaggaagatctcattcttttg |
41469392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 276
Target Start/End: Complemental strand, 41499239 - 41499197
Alignment:
| Q |
234 |
gagttcagaaatgaagatgcctatcacactcttggagtttctg |
276 |
Q |
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| T |
41499239 |
gagttcagaaatgtagatgctcatcacactcttggagtttctg |
41499197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41547604 - 41547556
Alignment:
| Q |
1 |
agattaaaattggagaattggaggaaacagtaaagaagaatttggcaac |
49 |
Q |
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| T |
41547604 |
agattaaaaatggtgaattgaatgaaacagtaaacaagaatttggcaac |
41547556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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