View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5852-10 (Length: 143)
Name: Solexa-NF5852-10
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5852-10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 90; Significance: 7e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 41703906 - 41703773
Alignment:
| Q |
7 |
agaactaacatgagttaattgttcattaaaacctaacaaaacgtcttagctaacaaggatactataatgttatagtccatctaccttgg----ataatag |
102 |
Q |
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| T |
41703906 |
agaactaacatgagttaattgttcattaaaacctaaaaaaacgtcttagctaacaaggatcctataatgttata-------taccttggatatataatag |
41703814 |
T |
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| Q |
103 |
ttcaataatcctgcactgtctgcctacatgtttttcttttt |
143 |
Q |
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| T |
41703813 |
ttcaataatcctgcactgtctgcctacatgtttttcttttt |
41703773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 41467210 - 41467341
Alignment:
| Q |
9 |
aactaacatgagttaattgttcattaaaacctaacaaaacgtcttagctaacaaggatactataatgttatagtccatctaccttggataatagttcaat |
108 |
Q |
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| T |
41467210 |
aactaacatgagttaattgttcattaaaacctaacaaaaggtcatggctaacaaggatactataattttatagcctatttaccttagataatagttc--- |
41467306 |
T |
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| Q |
109 |
aatcctgcactgtctgcctacatgtttttcttttt |
143 |
Q |
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| T |
41467307 |
aatcctgcactgtctacctacatctttttcttttt |
41467341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 6e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 36467121 - 36467252
Alignment:
| Q |
7 |
agaactaacatgagttaattgttcattaaaacctaacaaaacgtct-tagctaacaaggatactataatgttatagtccatctaccttggataatagttc |
105 |
Q |
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| T |
36467121 |
agaactaaaatgagttaattgttcattaaaatctaacaaaagggctatggctaacaaggatactataatgttatagcccatttaccttagatattagttc |
36467220 |
T |
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| Q |
106 |
aataatcctgcactgtctgcctacatgtttttctt |
140 |
Q |
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| T |
36467221 |
---aatcctgcactgcctgcctacatctttctctt |
36467252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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