View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5852-11 (Length: 141)
Name: Solexa-NF5852-11
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5852-11 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 2e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 17870300 - 17870164
Alignment:
| Q |
1 |
caaaggatagcaatagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcactggataataattcagagaaggtagtgc |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
17870300 |
caaaggatagcaatagctagagccatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcacttgataataattcagaaaaggtagtgc |
17870201 |
T |
|
| Q |
101 |
aagatgcattgaataaggtaatgattggaaggactag |
137 |
Q |
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| T |
17870200 |
aagatgcattgaataaggtaatggttggaaggactag |
17870164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 2e-32; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 2451157 - 2451287
Alignment:
| Q |
1 |
caaaggatagcaatagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcactggataataattcagagaaggtagtgc |
100 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||| |||| | | ||||||||| |||||| |
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| T |
2451157 |
caaaggattgcaatagctagagctatattgaagaatccaaaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaagttagtgc |
2451256 |
T |
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| Q |
101 |
aagatgcattgaataaggtaatgattggaag |
131 |
Q |
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||||||| || | | ||| ||||||||||| |
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| T |
2451257 |
aagatgctttagaaagggttatgattggaag |
2451287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 2641104 - 2640998
Alignment:
| Q |
1 |
caaaggatagcaatagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcactggataataattcagagaaggtagtgc |
100 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||||||||||| |||| | | |||||||| |||||| |
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| T |
2641104 |
caaaggattgcaatagctagagctatattgaagaatccaaaggtgttacttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtgc |
2641005 |
T |
|
| Q |
101 |
aagatgc |
107 |
Q |
| |
|
||||||| |
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|
| T |
2641004 |
aagatgc |
2640998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 2440435 - 2440568
Alignment:
| Q |
1 |
caaaggatagcaatagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcactggataataattcagagaaggtagtgc |
100 |
Q |
| |
|
||||| || ||||||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||||| |||| | | |||||||| |||| | |
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| T |
2440435 |
caaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtcc |
2440534 |
T |
|
| Q |
101 |
aagatgcattgaataaggtaatgattggaaggac |
134 |
Q |
| |
|
||||||| || | ||||| ||| |||||||||| |
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|
| T |
2440535 |
aagatgctttagaaaaggtcatggttggaaggac |
2440568 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 2592381 - 2592514
Alignment:
| Q |
1 |
caaaggatagcaatagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcactggataataattcagagaaggtagtgc |
100 |
Q |
| |
|
||||| || ||||||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||||| |||| | | |||||||| |||| | |
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|
| T |
2592381 |
caaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtcc |
2592480 |
T |
|
| Q |
101 |
aagatgcattgaataaggtaatgattggaaggac |
134 |
Q |
| |
|
||||||| || | ||||| ||| |||||||||| |
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|
| T |
2592481 |
aagatgctttagaaaaggtcatggttggaaggac |
2592514 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 2596448 - 2596344
Alignment:
| Q |
1 |
caaaggatagcaatagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcactggataataattcagagaaggtagtgc |
100 |
Q |
| |
|
||||| || ||||||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||||| |||| | | |||||||| |||| | |
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| T |
2596448 |
caaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtcc |
2596349 |
T |
|
| Q |
101 |
aagat |
105 |
Q |
| |
|
||||| |
|
|
| T |
2596348 |
aagat |
2596344 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 2568889 - 2568811
Alignment:
| Q |
1 |
caaaggatagcaatagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcactggata |
79 |
Q |
| |
|
||||| || ||||||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||||| |||| |
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|
| T |
2568889 |
caaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgata |
2568811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 2672264 - 2672186
Alignment:
| Q |
1 |
caaaggatagcaatagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcactggata |
79 |
Q |
| |
|
||||| || ||||||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||||| |||| |
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|
| T |
2672264 |
caaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgata |
2672186 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 2623925 - 2624003
Alignment:
| Q |
1 |
caaaggatagcaatagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcactggata |
79 |
Q |
| |
|
||||| || ||||||||||||||||| || ||||||||| | ||||||||| | |||||||||||||||||||| |||| |
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|
| T |
2623925 |
caaagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgata |
2624003 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 39157727 - 39157765
Alignment:
| Q |
1 |
caaaggatagcaatagctagagctatgttgaagaatcca |
39 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| |
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| T |
39157727 |
caaaggatagcaatagctagagcaatgttgaagaatcca |
39157765 |
T |
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