View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5852-12 (Length: 140)
Name: Solexa-NF5852-12
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5852-12 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 6e-63; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 6e-63
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 55578111 - 55578236
Alignment:
| Q |
8 |
attaacgcatagaatagttagaaccatctgaccatgtattacttcatattaattggtcaaattgtttggaggcaaatcactcaacgcaggtgacttaagt |
107 |
Q |
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| T |
55578111 |
attaacgcatagaatagttagaaccatctgaccaagtattacttcatattaattggtcaaattgtttggaggcaaatcactcaacgcaggtgacttaagt |
55578210 |
T |
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| Q |
108 |
cactttcggttctacttcttcctcca |
133 |
Q |
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| T |
55578211 |
cactttcggttctacttcttcctcca |
55578236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 44852993 - 44852924
Alignment:
| Q |
20 |
aatagttagaaccatctgaccatgtattacttcatattaattggtcaaattgtttggaggcaaatcactc |
89 |
Q |
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| T |
44852993 |
aatagttagaaccatctaaccatgtactacttcatattaattggtcaaattctctggaggcaaatcactc |
44852924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 44885153 - 44885096
Alignment:
| Q |
27 |
agaaccatctgaccatgtattacttcatattaattggtcaaattgtttggaggcaaat |
84 |
Q |
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| T |
44885153 |
agaaccatttaaccatatattacttcatattaactggtcaaattctctggaggcaaat |
44885096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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