View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5852-16 (Length: 137)

Name: Solexa-NF5852-16
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5852-16
Solexa-NF5852-16
[»] chr4 (5 HSPs)
chr4 (1-137)||(17278669-17278805)
chr4 (25-137)||(13602900-13603012)
chr4 (55-137)||(3462734-3462816)
chr4 (54-116)||(18618504-18618565)
chr4 (25-115)||(5506235-5506326)
[»] chr2 (2 HSPs)
chr2 (1-137)||(18371550-18371686)
chr2 (20-78)||(21872391-21872446)
[»] chr8 (3 HSPs)
chr8 (1-115)||(40545629-40545743)
chr8 (99-136)||(28914774-28914811)
chr8 (27-137)||(8989343-8989455)
[»] chr7 (3 HSPs)
chr7 (20-137)||(7229742-7229858)
chr7 (25-137)||(9634234-9634346)
chr7 (58-102)||(8835435-8835479)
[»] chr3 (3 HSPs)
chr3 (51-137)||(8815950-8816034)
chr3 (24-137)||(14800854-14800967)
chr3 (81-114)||(14753232-14753265)
[»] scaffold0004 (1 HSPs)
scaffold0004 (43-136)||(225699-225792)
[»] chr6 (2 HSPs)
chr6 (44-114)||(22724641-22724711)
chr6 (91-137)||(23143103-23143149)
[»] chr1 (3 HSPs)
chr1 (43-137)||(22586343-22586437)
chr1 (2-78)||(18576908-18576984)
chr1 (43-114)||(16884376-16884446)
[»] chr5 (1 HSPs)
chr5 (87-131)||(17349537-17349581)


Alignment Details
Target: chr4 (Bit Score: 133; Significance: 1e-69; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 1e-69
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 17278805 - 17278669
Alignment:
Q  1 aacactgagattgatataagttccccctttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatg 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17278805 aacattgagattgatataagttccccctttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatg 17278706  T
Q  101 aaaaatgtttacaaattgttgtgattacaaaagattc 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  17278705 aaaaatgtttacaaattgttgtgattacaaaagattc 17278669  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 13602900 - 13603012
Alignment:
Q  25 ccctttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtga 124  Q
    |||||||| ||||| |||||| ||| ||| |||||| ||||||||||  ||| |  || || ||| ||||||| ||||||||||||||||||||||  ||    
T  13602900 ccctttcgccctcgcttcaggatacctccactcttcttgatagaaaacatctttatcaaggacttccactatgttgaaaaatgtttacaaattgttaaga 13602999  T
Q  125 ttacaaaagattc 137  Q
    |||||||||||||    
T  13603000 ttacaaaagattc 13603012  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 3462734 - 3462816
Alignment:
Q  55 ctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattc 137  Q
    |||||| |||||||||||||||||  || || ||| ||||||| |||||||||||||||||||||| |  || ||||||||||    
T  3462734 ctcttcttgatagaaaatgtctctatcaaggacttccactatgttgaaaaatgtttacaaattgttatagttgcaaaagattc 3462816  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 18618504 - 18618565
Alignment:
Q  54 tctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaat 116  Q
    |||||||||||||||||||| || |  ||||| |||||||||||||| |||||||||||||||    
T  18618504 tctcttcgtgatagaaaatgcctatatcacgggctttcactatgatg-aaaatgtttacaaat 18618565  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 5506235 - 5506326
Alignment:
Q  25 ccctttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgat-gaaaaatgtttacaaa 115  Q
    |||||||||||||| ||||    ||||| |||||||||||||||||| ||||||  |  |||||| |||||||||  |||||||||||||||    
T  5506235 ccctttcgtcctcgcttcacatcacatcatctcttcgtgatagaaaaagtctctatccaggtcttccactatgataaaaaaatgtttacaaa 5506326  T

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Target: chr2 (Bit Score: 65; Significance: 6e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 18371686 - 18371550
Alignment:
Q  1 aacactgagattgatataagttccccctttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatg 100  Q
    |||||||||||| |||   ||||||||||||||||||| ||| |||||| |||  ||||| || ||||||||||||||  || || ||| ||||||| ||    
T  18371686 aacactgagatttatagtggttccccctttcgtcctcgcttcggggtacctccattcttcttgttagaaaatgtctctatcaaggacttccactatgttg 18371587  T
Q  101 aaaaatgtttacaaattgttgtgattacaaaagattc 137  Q
    |||||||||||||||||||| ||||||||||||||||    
T  18371586 aaaaatgtttacaaattgttatgattacaaaagattc 18371550  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 21872446 - 21872391
Alignment:
Q  20 gttccccctttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctct 78  Q
    ||||||||||||||||||| ||| |||||| ||| ||||   |||||||||||||||||    
T  21872446 gttccccctttcgtcctcgcttcggggtacgtccactct---tgatagaaaatgtctct 21872391  T

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Target: chr8 (Bit Score: 55; Significance: 5e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 40545743 - 40545629
Alignment:
Q  1 aacactgagattgatataagttccccctttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatg 100  Q
    |||||||||||| ||| | |||||||||  |||||||| ||| |||||| |||| |||||||||||||||| ||||||  || ||| || ||||||||||    
T  40545743 aacactgagatttatagaggttccccctcccgtcctcgcttcggggtacgtcctttcttcgtgatagaaaacgtctctatcatggttttccactatgatg 40545644  T
Q  101 aaaaatgtttacaaa 115  Q
    |||||||||||||||    
T  40545643 aaaaatgtttacaaa 40545629  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 28914774 - 28914811
Alignment:
Q  99 tgaaaaatgtttacaaattgttgtgattacaaaagatt 136  Q
    |||||||||||||||||||||| |||||||||||||||    
T  28914774 tgaaaaatgtttacaaattgttatgattacaaaagatt 28914811  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 8989455 - 8989343
Alignment:
Q  27 ctttcgtcctcgattcaggg-tacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgat-gaaaaatgtttacaaattgttgtga 124  Q
    ||||| |||||| ||| ||| ||| ||| |||||| ||||||||||  |||||  || || ||| |||||| || ||||||| ||||||||||||| |||    
T  8989455 ctttcatcctcgcttcggggatacctccactcttcttgatagaaaacttctctatcaaggacttccactattattgaaaaatatttacaaattgttatga 8989356  T
Q  125 ttacaaaagattc 137  Q
    |||||||| ||||    
T  8989355 ttacaaaatattc 8989343  T

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Target: chr7 (Bit Score: 50; Significance: 5e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 7229742 - 7229858
Alignment:
Q  20 gttccccctttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgt 119  Q
    ||||||||||| || |||| ||| |||||| ||| |||||| |||||||| || |||||  || || ||| ||||||| |||||||||||||||||||||    
T  7229742 gttcccccttttgttctcgcttcggggtac-tcccctcttcttgatagaatatctctctatcaaggacttccactatgttgaaaaatgtttacaaattgt 7229840  T
Q  120 tgtgattacaaaagattc 137  Q
    | ||||||||||||||||    
T  7229841 tatgattacaaaagattc 7229858  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 9634346 - 9634234
Alignment:
Q  25 ccctttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtga 124  Q
    |||||||| ||||| |||||| ||| ||| |||||| ||||||||||  ||| |  || || ||| ||||||| ||||||||||||||||||||||  ||    
T  9634346 ccctttcgccctcgcttcaggatacctccactcttcttgatagaaaacatctttatcaaggacttccactatgttgaaaaatgtttacaaattgttaaga 9634247  T
Q  125 ttacaaaagattc 137  Q
    |||||||||||||    
T  9634246 ttacaaaagattc 9634234  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 8835479 - 8835435
Alignment:
Q  58 ttcgtgatagaaaatgtctctgacacggtctttcactatgatgaa 102  Q
    ||||||||| |||||||||||  |||||||||||| |||||||||    
T  8835479 ttcgtgataaaaaatgtctctatcacggtctttcattatgatgaa 8835435  T

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Target: chr3 (Bit Score: 48; Significance: 8e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 8815950 - 8816034
Alignment:
Q  51 tcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattc 137  Q
    ||||||||||||||||||||| ||||||  |||| |||| || |  |||||||||| ||||||||||||||||||||||||||||||    
T  8815950 tcctctcttcgtgatagaaaacgtctctaccacgatcttccatt--gatgaaaaatatttacaaattgttgtgattacaaaagattc 8816034  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 14800967 - 14800854
Alignment:
Q  24 cccctttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtg 123  Q
    ||||||||||||||| |||  ||||| ||| |||||| |||| ||||| ||||||  || |  ||| ||||||| |||||||| ||||||||||||| ||    
T  14800967 cccctttcgtcctcgcttcgaggtacctccactcttcttgattgaaaacgtctctatcaagaacttccactatgttgaaaaatatttacaaattgttatg 14800868  T
Q  124 attacaaaagattc 137  Q
     |||||||||||||    
T  14800867 gttacaaaagattc 14800854  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 14753232 - 14753265
Alignment:
Q  81 cacggtctttcactatgatgaaaaatgtttacaa 114  Q
    ||||||||| ||||||||||||||||||||||||    
T  14753232 cacggtcttccactatgatgaaaaatgtttacaa 14753265  T

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Target: scaffold0004 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 225792 - 225699
Alignment:
Q  43 agggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagatt 136  Q
    |||||||||||  | ||| |||||||||| ||||||  || || ||||||||||| |||||||||||  ||||||||| |||||||||||||||    
T  225792 agggtacatccattattcttgatagaaaacgtctctatcaaggactttcactatgttgaaaaatgttagcaaattgttatgattacaaaagatt 225699  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 22724711 - 22724641
Alignment:
Q  44 gggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaa 114  Q
    |||||||||||||| || ||||| |||||||||||  ||||||||| |||| |||| ||||||||||||||    
T  22724711 gggtacatcctctcatcttgatataaaatgtctctatcacggtcttccactctgataaaaaatgtttacaa 22724641  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 23143103 - 23143149
Alignment:
Q  91 cactatgatgaaaaatgtttacaaattgttgtgattacaaaagattc 137  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  23143103 cactatgttgaaaaatgtttacaaattgttatgattacaaaagattc 23143149  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 22586343 - 22586437
Alignment:
Q  43 agggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattc 137  Q
    ||||||||||| |||||| |||||||||| ||||||  ||    ||| ||||||| || |||||||||||||||| || ||||||||||||||||    
T  22586343 agggtacatccactcttcttgatagaaaaagtctctagcaaatacttccactatgttggaaaatgtttacaaattattatgattacaaaagattc 22586437  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 18576908 - 18576984
Alignment:
Q  2 acactgagattgatataagttccccctttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctct 78  Q
    ||||||||||| |||  ||||||||||||||||||||  || |||||| ||  |||||| || ||||||| ||||||    
T  18576908 acactgagatttatagtagttccccctttcgtcctcgtatcggggtacgtctactcttcttggtagaaaacgtctct 18576984  T

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Target: chr1; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 16884446 - 16884376
Alignment:
Q  43 agggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaa 114  Q
    |||||||||| |||||| |||| |||||| | ||||  ||||| ||| |||||||||| |||||||||||||    
T  16884446 agggtacatcatctctttgtgaaagaaaacgcctctatcacgggcttccactatgatg-aaaatgtttacaa 16884376  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 17349581 - 17349537
Alignment:
Q  87 ctttcactatgatgaaaaatgtttacaaattgttgtgattacaaa 131  Q
    ||||||||||||||||||||||||||||||| || ||||||||||    
T  17349581 ctttcactatgatgaaaaatgtttacaaatttttatgattacaaa 17349537  T

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