View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5852-18 (Length: 136)
Name: Solexa-NF5852-18
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5852-18 |
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Alignment Details
Target: chr1 (Bit Score: 45; Significance: 5e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 43023439 - 43023395
Alignment:
| Q |
4 |
gggtcggctagaattctttaagattgcttgggaaatagaagaaaa |
48 |
Q |
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| T |
43023439 |
gggtcggctagaattctttaagattgcttgggaaatagaagaaaa |
43023395 |
T |
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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 43023397 - 43023339
Alignment:
| Q |
81 |
aaaagatagtaaagcatggaagaccatgtgt---tatatagatcaagaaatcaaaagac |
136 |
Q |
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| T |
43023397 |
aaaagatagtaaaacatggaagaccatgtgtttatatatagatcaagaaatcaaaagac |
43023339 |
T |
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