View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5852-20 (Length: 133)
Name: Solexa-NF5852-20
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5852-20 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 1e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 14357444 - 14357320
Alignment:
| Q |
6 |
cagtatcgggcatgccttgaatatccttcatcctcactatttcgttcagcaatatcaacaccaccatcgccatcagtagttggaacttcttcaactgagt |
105 |
Q |
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| T |
14357444 |
cagtatcgggcatgccttgaatatccttcatcctcactatttcgttcagcaacatcaacaccaccatcgccatcagtagttggaacttcttcaactgggt |
14357345 |
T |
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| Q |
106 |
gaattgaagcatggctcacgttcat |
130 |
Q |
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| T |
14357344 |
gaattgaagcatggctcaccttcat |
14357320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 4e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 2 - 130
Target Start/End: Original strand, 29657542 - 29657676
Alignment:
| Q |
2 |
ccaacagtatcgggcatgccttgaatatccttcatcctcactatttcgttcagcaatatcaacac------caccatcgccatcagtagttggaacttct |
95 |
Q |
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| T |
29657542 |
ccaacactattgggcatgccttgaatatccttcatcctcactattttgttcagcaacaacaacaccaccatcaccatcaccatcagtagttggaacttct |
29657641 |
T |
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| Q |
96 |
tcaactgagtgaattgaagcatggctcacgttcat |
130 |
Q |
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| T |
29657642 |
tcaatttggtgaattgaagcatggctcacattcat |
29657676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 3e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 21731117 - 21731062
Alignment:
| Q |
75 |
ccatcagtagttggaacttcttcaactgagtgaattgaagcatggctcacgttcat |
130 |
Q |
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| T |
21731117 |
ccatcagtagttggaacttcttcaactgggtgaattgaagcatggctcacgttcat |
21731062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 5547328 - 5547383
Alignment:
| Q |
75 |
ccatcagtagttggaacttcttcaactgagtgaattgaagcatggctcacgttcat |
130 |
Q |
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| T |
5547328 |
ccatcaatagttcgaactttttcaactggatgaattgaagcatggctcacgttcat |
5547383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 21731186 - 21731158
Alignment:
| Q |
14 |
ggcatgccttgaatatccttcatcctcac |
42 |
Q |
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| T |
21731186 |
ggcatgccttgaatatccttcatcctcac |
21731158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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