View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5852-26 (Length: 127)
Name: Solexa-NF5852-26
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5852-26 |
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Alignment Details
Target: chr2 (Bit Score: 70; Significance: 5e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 5e-32
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 15820897 - 15820828
Alignment:
| Q |
7 |
aaaaataagtatcattccacaaataaaagtaaatgaaaaatattgaattaacttatctgtgagtaagttc |
76 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15820897 |
aaaaataagtatcattccacaaataaaagtaaatgaaaaatattgaattaacttatctgtgagtaagttc |
15820828 |
T |
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Target: chr2; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 15820630 - 15820580
Alignment:
| Q |
77 |
aacttgtctgtattaaaatatcaaaataatgtaatcttaggtcgaattctg |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15820630 |
aacttgtctgtattaaaatatcaaaataatgtaatcttgggtcgaattctg |
15820580 |
T |
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