View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5852-27 (Length: 126)

Name: Solexa-NF5852-27
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5852-27
Solexa-NF5852-27
[»] chr5 (12 HSPs)
chr5 (8-126)||(31464926-31465044)
chr5 (33-126)||(31407401-31407494)
chr5 (57-126)||(31416558-31416627)
chr5 (57-126)||(31494135-31494204)
chr5 (22-126)||(31387777-31387881)
chr5 (60-126)||(31475956-31476022)
chr5 (60-114)||(31483699-31483753)
chr5 (60-126)||(40843338-40843404)
chr5 (57-123)||(31460376-31460442)
chr5 (60-118)||(31463034-31463092)
chr5 (19-116)||(31390803-31390900)
chr5 (71-116)||(31395779-31395824)


Alignment Details
Target: chr5 (Bit Score: 119; Significance: 3e-61; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 3e-61
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 31464926 - 31465044
Alignment:
Q  8 ctaacaagtccgcaaggcagataacgaaactgaacagacagtacagagataccttcaataaattccactttccaaatagatgattgaaggaagggcttag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31464926 ctaacaagtccgcaaggcagataacgaaactgaacagacagtacagagataccttcaataaattccactttccaaatagatgattgaaggaagggcttag 31465025  T
Q  108 agcgtaacatagcagtcca 126  Q
    |||||||||||||||||||    
T  31465026 agcgtaacatagcagtcca 31465044  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 31407401 - 31407494
Alignment:
Q  33 gaaactgaacagacagtacagagataccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtcca 126  Q
    ||||||||| |||  ||| ||| ||| |||||| |||||||| |||||||||||||| |||||||||| ||| ||||| ||||| |||| ||||    
T  31407401 gaaactgaaaagagtgtaaagaaatatcttcaacaaattccaatttccaaatagatggttgaaggaagtgctgagagcataacagagcaatcca 31407494  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 31416558 - 31416627
Alignment:
Q  57 taccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtcca 126  Q
    ||||||||| |||||||| |||||||||||||| ||||| |||| ||||||||| ||||| | |||||||    
T  31416558 taccttcaacaaattccaatttccaaatagatggttgaaagaagagcttagagcataacaaatcagtcca 31416627  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 31494135 - 31494204
Alignment:
Q  57 taccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtcca 126  Q
    ||||||||| |||||||| |||||||||||||| ||||| |||| ||||||||| ||||| |||| ||||    
T  31494135 taccttcaacaaattccaatttccaaatagatggttgaacgaagagcttagagcataacaaagcaatcca 31494204  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 31387777 - 31387881
Alignment:
Q  22 aggcagataacgaaactgaacagacagtacagagataccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagca 121  Q
    |||||||||||||||||||| |  |  || ||| ||||||| || || ||||| || |||||||||||| ||||||||| ||| ||||| ||||| ||||    
T  31387777 aggcagataacgaaactgaaaatgctataaagaaataccttaaaaaagttccagttcccaaatagatgagtgaaggaagagctaagagcataacaaagca 31387876  T
Q  122 gtcca 126  Q
    |||||    
T  31387877 gtcca 31387881  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 31475956 - 31476022
Alignment:
Q  60 cttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtcca 126  Q
    |||||| |||||||| |||||||||||||  || ||||||| ||||||||| ||||| |||||||||    
T  31475956 cttcaacaaattccagtttccaaatagatagttaaaggaagagcttagagcataacaaagcagtcca 31476022  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 31483753 - 31483699
Alignment:
Q  60 cttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaa 114  Q
    |||||| ||| ||||||||||| ||| |||||||||||||| |||||||||||||    
T  31483753 cttcaacaaactccactttccacatatatgattgaaggaagagcttagagcgtaa 31483699  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 40843338 - 40843404
Alignment:
Q  60 cttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtcca 126  Q
    |||||| |||||||| |||||||||||||  |||||||||| ||||||||| ||||| | |||||||    
T  40843338 cttcaacaaattccaatttccaaatagatagttgaaggaagagcttagagcataacaaaccagtcca 40843404  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 31460376 - 31460442
Alignment:
Q  57 taccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagt 123  Q
    |||||| || || ||||| || |||||||||||||||||||||| ||| ||||| ||||| ||||||    
T  31460376 taccttaaaaaagttccagttcccaaatagatgattgaaggaagagctaagagcataacaaagcagt 31460442  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 31463034 - 31463092
Alignment:
Q  60 cttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacata 118  Q
    |||||| || ||||| |||||||||||||| |||||||||| ||||| ||| |||||||    
T  31463034 cttcaacaagttccaatttccaaatagatggttgaaggaagagcttacagcataacata 31463092  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 31390803 - 31390900
Alignment:
Q  19 gcaaggcagataacgaaactgaacagacagtacagagataccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaaca 116  Q
    |||||||| |||| ||||||||| | |  ||||||| | | ||| || || ||||| |||||||||||||| ||||||||||  |||||||| |||||    
T  31390803 gcaaggcaaataatgaaactgaaaacagtgtacagaaaaatctttaacaagttccagtttccaaatagatggttgaaggaagaacttagagcataaca 31390900  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 31395824 - 31395779
Alignment:
Q  71 tccactttccaaatagatgattgaaggaagggcttagagcgtaaca 116  Q
    |||| ||||||||||||||||||||||||| ||| ||||| |||||    
T  31395824 tccagtttccaaatagatgattgaaggaagagctgagagcataaca 31395779  T

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