View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5852-29 (Length: 125)
Name: Solexa-NF5852-29
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5852-29 |
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| [»] scaffold0474 (1 HSPs) |
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Alignment Details
Target: scaffold0474 (Bit Score: 114; Significance: 3e-58; HSPs: 1)
Name: scaffold0474
Description:
Target: scaffold0474; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 9264 - 9147
Alignment:
| Q |
8 |
ttttggagacaatttcatctaagttacttcatctggaggttcttatcttaagtgcagaaaacttgactaatgaaatcctgccttcactaaggggatttac |
107 |
Q |
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| T |
9264 |
ttttggagacaatttcatctaagttactgcatctggaggttcttatcttaagtgcagaaaacttgactaatgaaatcctgccttcactaaggggatttac |
9165 |
T |
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| Q |
108 |
atctttgaaggaactagt |
125 |
Q |
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|||||||||||||||||| |
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| T |
9164 |
atctttgaaggaactagt |
9147 |
T |
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Target: chr7 (Bit Score: 43; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 24266664 - 24266550
Alignment:
| Q |
8 |
ttttggagacaatttcatctaagttacttcatctggaggttcttatcttaagtgcagaaaacttgactaatgaaatcctgccttcactaaggggatttac |
107 |
Q |
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|||||||||||||| |||| ||||| || ||| ||||||| ||| | ||||| | || |||| |||||||||||||||||||||||||||||| | |
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| T |
24266664 |
ttttggagacaattccatcaaagttgctacatttggaggtccttgacataagttacaacaatttgagtaatgaaatcctgccttcactaaggggattcaa |
24266565 |
T |
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| Q |
108 |
atctttgaaggaact |
122 |
Q |
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| T |
24266564 |
atctttgaaggaact |
24266550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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