View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5852-3 (Length: 176)
Name: Solexa-NF5852-3
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5852-3 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-81
Query Start/End: Original strand, 7 - 170
Target Start/End: Original strand, 35639599 - 35639762
Alignment:
| Q |
7 |
actttyttccaaccgatctctkctaccctcgtccacaacctgaacaatccacaacttctcccaccgtgcttcctctcaaaactccaaacagtgaagatct |
106 |
Q |
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| T |
35639599 |
acttttttccaaccgatctcttctaccctcgtccacagcctgaacaatccacaacttctcccaccgtgcttcctctcaaaactccaaacggtgaagatct |
35639698 |
T |
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| Q |
107 |
tcctcagactcaacaaaaacaaccagctaggagcatgatcaaagtaaacccttctacttcttct |
170 |
Q |
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| T |
35639699 |
tcctcagactcaacaaaaacaaccagctaggagcatgatcaaagtaaacccttctacttcttct |
35639762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 9e-48
Query Start/End: Original strand, 7 - 166
Target Start/End: Original strand, 35642327 - 35642486
Alignment:
| Q |
7 |
actttyttccaaccgatctctkctaccctcgtccacaacctgaacaatccacaacttctcccaccgtgcttcctctcaaaactccaaacagtgaagatct |
106 |
Q |
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||||| ||||||| ||||||| ||||||||||||||||||| ||||||| || ||||||| | |||||||||||||||||||||||| ||||||||||| |
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| T |
35642327 |
acttttttccaactgatctcttctaccctcgtccacaacctcaacaatctactgcttctcctaacgtgcttcctctcaaaactccaaatagtgaagatct |
35642426 |
T |
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| Q |
107 |
tcctcagactcaacaaaaacaaccagctaggagcatgatcaaagtaaacccttctacttc |
166 |
Q |
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| T |
35642427 |
tccacaaactcaacaacaacaaccagctagtagcatgatcaaagccaccccttctacttc |
35642486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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