View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5852-31 (Length: 122)

Name: Solexa-NF5852-31
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5852-31
Solexa-NF5852-31
[»] chr2 (12 HSPs)
chr2 (1-122)||(15820260-15820380)
chr2 (3-56)||(10849652-10849705)
chr2 (5-58)||(7877732-7877785)
chr2 (5-56)||(17508999-17509050)
chr2 (5-56)||(30166242-30166293)
chr2 (22-56)||(3977183-3977217)
chr2 (5-55)||(43169133-43169183)
chr2 (5-55)||(43195675-43195725)
chr2 (22-55)||(3976867-3976900)
chr2 (22-55)||(21214381-21214414)
chr2 (1-56)||(25441586-25441641)
chr2 (5-56)||(42768495-42768546)
[»] chr7 (6 HSPs)
chr7 (1-56)||(1663763-1663818)
chr7 (22-56)||(7135423-7135457)
chr7 (5-56)||(43168056-43168107)
chr7 (5-55)||(257430-257480)
chr7 (5-55)||(41670759-41670809)
chr7 (22-55)||(40121798-40121831)
[»] chr4 (10 HSPs)
chr4 (1-60)||(29669836-29669895)
chr4 (5-55)||(15665043-15665093)
chr4 (1-55)||(29669521-29669575)
chr4 (5-55)||(990732-990782)
chr4 (1-58)||(36558625-36558682)
chr4 (22-55)||(52214506-52214539)
chr4 (22-55)||(53740073-53740106)
chr4 (5-57)||(53739746-53739798)
chr4 (24-55)||(32988452-32988483)
chr4 (5-56)||(50857902-50857953)
[»] chr8 (7 HSPs)
chr8 (5-59)||(21653213-21653267)
chr8 (22-57)||(18905745-18905780)
chr8 (21-56)||(20298695-20298730)
chr8 (21-56)||(21085327-21085362)
chr8 (5-56)||(32931296-32931347)
chr8 (22-57)||(36997055-36997090)
chr8 (1-56)||(3184062-3184117)
[»] chr6 (7 HSPs)
chr6 (1-55)||(8143909-8143963)
chr6 (5-56)||(1408901-1408952)
chr6 (5-56)||(10418501-10418552)
chr6 (5-55)||(19753767-19753817)
chr6 (22-55)||(21067237-21067270)
chr6 (5-57)||(1745005-1745057)
chr6 (7-55)||(21089013-21089061)
[»] chr1 (3 HSPs)
chr1 (5-55)||(8520398-8520448)
chr1 (5-55)||(35926384-35926434)
chr1 (22-55)||(37600788-37600821)
[»] chr3 (9 HSPs)
chr3 (1-58)||(3985615-3985672)
chr3 (22-55)||(13769471-13769504)
chr3 (22-57)||(4255399-4255434)
chr3 (1-56)||(24860219-24860274)
chr3 (5-55)||(27219220-27219270)
chr3 (5-55)||(41380615-41380665)
chr3 (5-55)||(45443171-45443221)
chr3 (5-55)||(54368930-54368980)
chr3 (22-55)||(4255761-4255794)
[»] chr5 (5 HSPs)
chr5 (22-57)||(12595283-12595318)
chr5 (5-55)||(13843588-13843638)
chr5 (5-55)||(27760282-27760332)
chr5 (22-55)||(30588225-30588258)
chr5 (23-55)||(17016272-17016304)


Alignment Details
Target: chr2 (Bit Score: 106; Significance: 2e-53; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 15820260 - 15820380
Alignment:
Q  1 aggccgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaatttctcttgtagtaatttgctttgctccactgaaggaagcaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15820260 aggccgcaattaaggcaaccgggggcggaccgcaattaaaacg-aatttccaacaatttctcttgtagtaatttgctttgctccactgacggaagcaaat 15820358  T
Q  101 gagcgggtaatgttgagattat 122  Q
    ||||||||||||||||||||||    
T  15820359 gagcgggtaatgttgagattat 15820380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 10849652 - 10849705
Alignment:
Q  3 gccgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaa 56  Q
    |||||||||||||||||  ||||||||||||||| || ||||||||||||||||    
T  10849652 gccgcaattaaggcaactaggggcggaccgcaataaaggcggaatttccaacaa 10849705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 7877785 - 7877732
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaatt 58  Q
    ||||||| |||| ||  ||| |||||||||||||||||||||||||||||||||    
T  7877785 cgcaatttaggcgactagggacggaccgcaattaaagcggaatttccaacaatt 7877732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 17509050 - 17508999
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaa 56  Q
    |||||||||||| ||  ||||||||| |||||||| ||||||||||||||||    
T  17509050 cgcaattaaggcgacgaggggcggactgcaattaaggcggaatttccaacaa 17508999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 30166242 - 30166293
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaa 56  Q
    |||||||||||| ||  |||||||||| ||||||| ||||||||||||||||    
T  30166242 cgcaattaaggcgactaggggcggaccacaattaaggcggaatttccaacaa 30166293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 3977183 - 3977217
Alignment:
Q  22 ggggcggaccgcaattaaagcggaatttccaacaa 56  Q
    |||||||||||||||||| ||||||||||||||||    
T  3977183 ggggcggaccgcaattaaggcggaatttccaacaa 3977217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 43169183 - 43169133
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaaca 55  Q
    ||||||| |||| ||  |||||||||||||||||| |||||||||||||||    
T  43169183 cgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 43169133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 43195725 - 43195675
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaaca 55  Q
    ||||||| |||| ||  |||||||||||||||||| |||||||||||||||    
T  43195725 cgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 43195675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 3976867 - 3976900
Alignment:
Q  22 ggggcggaccgcaattaaagcggaatttccaaca 55  Q
    |||||||| |||||||||||||||||||||||||    
T  3976867 ggggcggatcgcaattaaagcggaatttccaaca 3976900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 21214381 - 21214414
Alignment:
Q  22 ggggcggaccgcaattaaagcggaatttccaaca 55  Q
    |||||||||||||||||| |||||||||||||||    
T  21214381 ggggcggaccgcaattaaggcggaatttccaaca 21214414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 25441641 - 25441586
Alignment:
Q  1 aggccgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaa 56  Q
    ||||||||||| |||| ||  ||||||||||||||| || | ||||||||||||||    
T  25441641 aggccgcaatttaggcgactaggggcggaccgcaataaaggtggaatttccaacaa 25441586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 42768495 - 42768546
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaa 56  Q
    ||||||| |||| ||  |||||| ||||||||||| ||||||||||||||||    
T  42768495 cgcaatttaggcgactaggggcgaaccgcaattaaggcggaatttccaacaa 42768546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 2e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1663763 - 1663818
Alignment:
Q  1 aggccgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaa 56  Q
    |||||||||||||||||||  |||||||||||||||||| ||||||||||||||||    
T  1663763 aggccgcaattaaggcaactaggggcggaccgcaattaaggcggaatttccaacaa 1663818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 7135423 - 7135457
Alignment:
Q  22 ggggcggaccgcaattaaagcggaatttccaacaa 56  Q
    |||||||||||||||||||||||||||||||||||    
T  7135423 ggggcggaccgcaattaaagcggaatttccaacaa 7135457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 43168056 - 43168107
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaa 56  Q
    ||||||| |||| ||  |||||||||||||||||| ||||||||||||||||    
T  43168056 cgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaacaa 43168107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 257430 - 257480
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaaca 55  Q
    ||||||| |||| ||  |||||||||||||||||| |||||||||||||||    
T  257430 cgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 257480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 41670809 - 41670759
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaaca 55  Q
    ||||||| |||||||  ||||||||| |||||||| |||||||||||||||    
T  41670809 cgcaatttaggcaactaggggcggactgcaattaaggcggaatttccaaca 41670759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 40121798 - 40121831
Alignment:
Q  22 ggggcggaccgcaattaaagcggaatttccaaca 55  Q
    |||||||||||||||||| |||||||||||||||    
T  40121798 ggggcggaccgcaattaaggcggaatttccaaca 40121831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29669836 - 29669895
Alignment:
Q  1 aggccgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaatttc 60  Q
    |||||||||||||||| ||  |||| ||||||||||||| ||||||||||||||| ||||    
T  29669836 aggccgcaattaaggcgactaggggtggaccgcaattaaggcggaatttccaacactttc 29669895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 15665093 - 15665043
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaaca 55  Q
    ||||||| |||| || ||||||||||||||||||| |||||||||||||||    
T  15665093 cgcaatttaggcgactgggggcggaccgcaattaaggcggaatttccaaca 15665043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29669521 - 29669575
Alignment:
Q  1 aggccgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaaca 55  Q
    |||| ||||||||||| ||  |||||||||||||||||| |||||||||||||||    
T  29669521 aggcagcaattaaggcgactaggggcggaccgcaattaaggcggaatttccaaca 29669575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 990782 - 990732
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaaca 55  Q
    ||||||| |||| ||  |||||||||||||||||| |||||||||||||||    
T  990782 cgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 990732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 36558625 - 36558682
Alignment:
Q  1 aggccgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaatt 58  Q
    |||||||||||||||  ||  ||||||||| |||||||| || |||||||||||||||    
T  36558625 aggccgcaattaaggtgactaggggcggactgcaattaaggcagaatttccaacaatt 36558682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 52214539 - 52214506
Alignment:
Q  22 ggggcggaccgcaattaaagcggaatttccaaca 55  Q
    |||||||||||||||||| |||||||||||||||    
T  52214539 ggggcggaccgcaattaaggcggaatttccaaca 52214506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 53740106 - 53740073
Alignment:
Q  22 ggggcggaccgcaattaaagcggaatttccaaca 55  Q
    |||||||||||||||||| |||||||||||||||    
T  53740106 ggggcggaccgcaattaaggcggaatttccaaca 53740073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 53739798 - 53739746
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaat 57  Q
    ||||||| |||| ||  |||||||||||||||||| || ||||||||||||||    
T  53739798 cgcaatttaggcgactaggggcggaccgcaattaaggcagaatttccaacaat 53739746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 55
Target Start/End: Original strand, 32988452 - 32988483
Alignment:
Q  24 ggcggaccgcaattaaagcggaatttccaaca 55  Q
    |||||||||||||||| |||||||||||||||    
T  32988452 ggcggaccgcaattaaggcggaatttccaaca 32988483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 50857953 - 50857902
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaa 56  Q
    ||||||| |||| ||  |||| ||||||||||||| ||||||||||||||||    
T  50857953 cgcaatttaggcgactaggggtggaccgcaattaaggcggaatttccaacaa 50857902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 21653267 - 21653213
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaattt 59  Q
    ||||||| |||| ||  |||||||||||||||||| |||||||||||||||||||    
T  21653267 cgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaacaattt 21653213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 18905780 - 18905745
Alignment:
Q  22 ggggcggaccgcaattaaagcggaatttccaacaat 57  Q
    |||||||||||||||||| |||||||||||||||||    
T  18905780 ggggcggaccgcaattaaggcggaatttccaacaat 18905745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 20298695 - 20298730
Alignment:
Q  21 gggggcggaccgcaattaaagcggaatttccaacaa 56  Q
    ||||||||||||||||||| ||||||||||||||||    
T  20298695 gggggcggaccgcaattaaggcggaatttccaacaa 20298730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 21085327 - 21085362
Alignment:
Q  21 gggggcggaccgcaattaaagcggaatttccaacaa 56  Q
    ||||||||||||||||||| ||||||||||||||||    
T  21085327 gggggcggaccgcaattaaggcggaatttccaacaa 21085362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 32931347 - 32931296
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaa 56  Q
    ||||||| |||| ||  |||||||||||||||||| ||||||||||||||||    
T  32931347 cgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaacaa 32931296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 36997090 - 36997055
Alignment:
Q  22 ggggcggaccgcaattaaagcggaatttccaacaat 57  Q
    |||||||||||||||||| |||||||||||||||||    
T  36997090 ggggcggaccgcaattaaggcggaatttccaacaat 36997055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 3184062 - 3184117
Alignment:
Q  1 aggccgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaa 56  Q
    ||||||||||| |||| ||  ||||||||||||||| || ||||||||| ||||||    
T  3184062 aggccgcaatttaggcgactaggggcggaccgcaataaaggcggaatttacaacaa 3184117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8143963 - 8143909
Alignment:
Q  1 aggccgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaaca 55  Q
    |||||||||||||||| ||  ||||| |||||||||||| |||||||||||||||    
T  8143963 aggccgcaattaaggcgactaggggcagaccgcaattaaggcggaatttccaaca 8143909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 1408952 - 1408901
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaa 56  Q
    ||||||| |||| ||  |||||||||||||||||| ||||||||||||||||    
T  1408952 cgcaatttaggcgacaaggggcggaccgcaattaaggcggaatttccaacaa 1408901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 10418501 - 10418552
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaa 56  Q
    |||||||||||| ||  |||||||||||||||||| |||||| |||||||||    
T  10418501 cgcaattaaggcgactaggggcggaccgcaattaaggcggaaattccaacaa 10418552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 19753767 - 19753817
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaaca 55  Q
    ||||||| |||||||  ||||| |||||||||||| |||||||||||||||    
T  19753767 cgcaatttaggcaactaggggcagaccgcaattaaggcggaatttccaaca 19753817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 21067237 - 21067270
Alignment:
Q  22 ggggcggaccgcaattaaagcggaatttccaaca 55  Q
    |||||||||||||||||| |||||||||||||||    
T  21067237 ggggcggaccgcaattaaggcggaatttccaaca 21067270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 1745005 - 1745057
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaat 57  Q
    ||||||| |||| || || |||||||||| ||||| |||||||||||||||||    
T  1745005 cgcaatttaggcgactggaggcggaccgcgattaaggcggaatttccaacaat 1745057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 21089013 - 21089061
Alignment:
Q  7 caattaaggcaaccgggggcggaccgcaattaaagcggaatttccaaca 55  Q
    |||||||||| ||  |||||||||||||||||| || ||||||||||||    
T  21089013 caattaaggcgactaggggcggaccgcaattaaggcagaatttccaaca 21089061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 8520398 - 8520448
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaaca 55  Q
    ||||||| |||| ||  ||||||||||||||||||||||||||||||||||    
T  8520398 cgcaatttaggcgactaggggcggaccgcaattaaagcggaatttccaaca 8520448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 35926384 - 35926434
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaaca 55  Q
    ||||||| |||| ||  |||||||||||||||||| |||||||||||||||    
T  35926384 cgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 35926434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 37600821 - 37600788
Alignment:
Q  22 ggggcggaccgcaattaaagcggaatttccaaca 55  Q
    |||||||||||||||||| |||||||||||||||    
T  37600821 ggggcggaccgcaattaaggcggaatttccaaca 37600788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 3985672 - 3985615
Alignment:
Q  1 aggccgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaatt 58  Q
    |||||||||||||||| ||  ||||||||| |||||||| || |||||||||||||||    
T  3985672 aggccgcaattaaggcgactaggggcggactgcaattaaggcagaatttccaacaatt 3985615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 13769471 - 13769504
Alignment:
Q  22 ggggcggaccgcaattaaagcggaatttccaaca 55  Q
    ||||||||||||||||||||||||||||||||||    
T  13769471 ggggcggaccgcaattaaagcggaatttccaaca 13769504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 4255434 - 4255399
Alignment:
Q  22 ggggcggaccgcaattaaagcggaatttccaacaat 57  Q
    |||||||||||||||||| |||||||||||||||||    
T  4255434 ggggcggaccgcaattaaggcggaatttccaacaat 4255399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24860219 - 24860274
Alignment:
Q  1 aggccgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaacaa 56  Q
    ||||||||||| |||||||  ||||||||||||||| || || |||||||||||||    
T  24860219 aggccgcaatttaggcaactaggggcggaccgcaataaaggcagaatttccaacaa 24860274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 27219270 - 27219220
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaaca 55  Q
    ||||||| |||| ||  |||||||||||||||||| |||||||||||||||    
T  27219270 cgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 27219220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 41380665 - 41380615
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaaca 55  Q
    |||||||||||| ||  ||||||| |||||||||| |||||||||||||||    
T  41380665 cgcaattaaggcgactaggggcgggccgcaattaaggcggaatttccaaca 41380615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 45443221 - 45443171
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaaca 55  Q
    ||||||| |||| ||  |||||||||||||||||| |||||||||||||||    
T  45443221 cgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 45443171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 54368980 - 54368930
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaaca 55  Q
    ||||||| |||| ||  |||||||||||||||||| |||||||||||||||    
T  54368980 cgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 54368930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 4255794 - 4255761
Alignment:
Q  22 ggggcggaccgcaattaaagcggaatttccaaca 55  Q
    |||||||||||||||||| |||||||||||||||    
T  4255794 ggggcggaccgcaattaaggcggaatttccaaca 4255761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 12595283 - 12595318
Alignment:
Q  22 ggggcggaccgcaattaaagcggaatttccaacaat 57  Q
    |||||||||||||||||| |||||||||||||||||    
T  12595283 ggggcggaccgcaattaaggcggaatttccaacaat 12595318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 13843638 - 13843588
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaaca 55  Q
    ||||||| |||| ||  |||||||||||||||||| |||||||||||||||    
T  13843638 cgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 13843588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 27760332 - 27760282
Alignment:
Q  5 cgcaattaaggcaaccgggggcggaccgcaattaaagcggaatttccaaca 55  Q
    ||||||| |||| ||| ||||| |||||||||||| |||||||||||||||    
T  27760332 cgcaatttaggcgaccaggggcagaccgcaattaaggcggaatttccaaca 27760282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 30588225 - 30588258
Alignment:
Q  22 ggggcggaccgcaattaaagcggaatttccaaca 55  Q
    |||||||||||||||||| |||||||||||||||    
T  30588225 ggggcggaccgcaattaaggcggaatttccaaca 30588258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 17016272 - 17016304
Alignment:
Q  23 gggcggaccgcaattaaagcggaatttccaaca 55  Q
    ||||||||||||||||| |||||||||||||||    
T  17016272 gggcggaccgcaattaaggcggaatttccaaca 17016304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University