View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5852-34 (Length: 116)

Name: Solexa-NF5852-34
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5852-34
Solexa-NF5852-34
[»] chr5 (1 HSPs)
chr5 (16-115)||(4557695-4557794)
[»] chr7 (5 HSPs)
chr7 (17-114)||(21491186-21491283)
chr7 (19-115)||(18367022-18367118)
chr7 (17-111)||(22078050-22078143)
chr7 (27-114)||(11036095-11036181)
chr7 (73-114)||(9993663-9993704)
[»] chr4 (2 HSPs)
chr4 (16-113)||(49499474-49499571)
chr4 (83-114)||(69656-69687)
[»] chr3 (5 HSPs)
chr3 (16-115)||(11937567-11937666)
chr3 (19-114)||(9104552-9104646)
chr3 (27-111)||(5004469-5004551)
chr3 (43-79)||(8731212-8731247)
chr3 (43-79)||(9083099-9083134)
[»] chr8 (3 HSPs)
chr8 (15-114)||(40841214-40841312)
chr8 (73-114)||(35840679-35840720)
chr8 (16-64)||(3189128-3189175)
[»] chr6 (4 HSPs)
chr6 (16-111)||(32449955-32450049)
chr6 (48-115)||(26182410-26182476)
chr6 (28-90)||(24163325-24163387)
chr6 (27-111)||(10751309-10751391)
[»] chr1 (4 HSPs)
chr1 (16-103)||(35761742-35761828)
chr1 (16-111)||(19198452-19198546)
chr1 (42-79)||(26317626-26317662)
chr1 (83-114)||(6836274-6836305)
[»] chr2 (2 HSPs)
chr2 (50-115)||(28266883-28266947)
chr2 (83-114)||(44788876-44788907)


Alignment Details
Target: chr5 (Bit Score: 80; Significance: 5e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 5e-38
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 4557695 - 4557794
Alignment:
Q  16 ccgccacacatgcaccacaaaaatgcatatgctaatgcatgatcatgaacaatgaagactaaatctagccacttaggcacaacaatgctatatgatatta 115  Q
    |||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  4557695 ccgccacacaggcaccacagagatgcatatgctaatgcatgatcatgaacaatgaagactaaatccagccacttaggcacaacaatgcaatatgatatta 4557794  T

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Target: chr7 (Bit Score: 78; Significance: 8e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 8e-37
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 21491186 - 21491283
Alignment:
Q  17 cgccacacatgcaccacaaaaatgcatatgctaatgcatgatcatgaacaatgaagactaaatctagccacttaggcacaacaatgctatatgatatt 114  Q
    ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  21491186 cgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaacaatgaagactaaatccagccacttaggcacaacaatgcaatatgatatt 21491283  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 18367022 - 18367118
Alignment:
Q  19 ccacacatgcaccacaaaaatgcatatgctaatgcatgatcatgaacaatgaagactaaatctagccacttaggcacaacaatgctatatgatatta 115  Q
    |||| ||||||||||| |||| ||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |||||||||| |||||||||||    
T  18367022 ccacccatgcaccacacaaatacatatgctaatgcgtgatcatgaacaatgaagattaaatccagccacttagggacaacaatgcaatatgatatta 18367118  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 7e-28
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 22078143 - 22078050
Alignment:
Q  17 cgccacacatgcaccacaaaaatgcatatgctaatgcatgatcatgaacaatgaagactaaatctagccacttaggcacaacaatgctatatgat 111  Q
    ||||||||| |||||||| | ||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||| |||||||    
T  22078143 cgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaa-aatgaagactaaatcccgccacttaggcacaacaatgcaatatgat 22078050  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 11036095 - 11036181
Alignment:
Q  27 gcaccacaaaaatgcatatgctaatgcatgatcatgaacaatgaagactaaatctagccacttaggcacaacaatgctatatgatatt 114  Q
    |||||||| | ||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  11036095 gcaccacagagatgcatatgctaatgcatgatcatgaa-aatgaagactaaatcccgccacttaggcacaacaatgcaatatgatatt 11036181  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 9993704 - 9993663
Alignment:
Q  73 actaaatctagccacttaggcacaacaatgctatatgatatt 114  Q
    ||||||||  ||||||||||||||||||||| ||||||||||    
T  9993704 actaaatcccgccacttaggcacaacaatgcaatatgatatt 9993663  T

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Target: chr4 (Bit Score: 74; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 49499571 - 49499474
Alignment:
Q  16 ccgccacacatgcaccacaaaaatgcatatgctaatgcatgatcatgaacaatgaagactaaatctagccacttaggcacaacaatgctatatgatat 113  Q
    |||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||    
T  49499571 ccgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaacaatgaagactaaatccagccacttaggcacaaaaatgcaatatgatat 49499474  T

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Target: chr4; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 114
Target Start/End: Complemental strand, 69687 - 69656
Alignment:
Q  83 gccacttaggcacaacaatgctatatgatatt 114  Q
    ||||||||||||||||||||| ||||||||||    
T  69687 gccacttaggcacaacaatgcaatatgatatt 69656  T

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Target: chr3 (Bit Score: 72; Significance: 3e-33; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 11937567 - 11937666
Alignment:
Q  16 ccgccacacatgcaccacaaaaatgcatatgctaatgcatgatcatgaacaatgaagactaaatctagccacttaggcacaacaatgctatatgatatta 115  Q
    |||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| |||||||| | |||||||||||||||||||| |||||||||||    
T  11937567 ccgccacacaggcaccacacaaatgcatatgctaatgcatgatcataaacaatgaaaactaaatccaaccacttaggcacaacaatgcaatatgatatta 11937666  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 9104646 - 9104552
Alignment:
Q  19 ccacacatgcaccacaaaaatgcatatgctaatgcatgatcatgaacaatgaagactaaatctagccacttaggcacaacaatgctatatgatatt 114  Q
    ||||||| |||||||| | ||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||| || ||||||||||    
T  9104646 ccacacaggcaccacacagatgcatatgctaatgcatgatcatgaa-aatgaagactaaatcacgccacttaggcacaacaaagcaatatgatatt 9104552  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 5004469 - 5004551
Alignment:
Q  27 gcaccacaaaaatgcatatgctaatgcatgatcatgaacaatgaagactaaatctagccacttaggcacaacaatgctatatgat 111  Q
    |||||||| | |||||||||| | |||||||||||||| |||| |||||||| |  |||||| |||||||| ||||| |||||||    
T  5004469 gcaccacacagatgcatatgcca-tgcatgatcatgaa-aatgcagactaaaacccgccactaaggcacaataatgcaatatgat 5004551  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 8731247 - 8731212
Alignment:
Q  43 tatgctaatgcatgatcatgaacaatgaagactaaat 79  Q
    |||||||||||||||||||||| ||||||||||||||    
T  8731247 tatgctaatgcatgatcatgaa-aatgaagactaaat 8731212  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 9083134 - 9083099
Alignment:
Q  43 tatgctaatgcatgatcatgaacaatgaagactaaat 79  Q
    |||||||||||||||||||||| ||||||||||||||    
T  9083134 tatgctaatgcatgatcatgaa-aatgaagactaaat 9083099  T

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Target: chr8 (Bit Score: 60; Significance: 4e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 40841214 - 40841312
Alignment:
Q  15 gccgccacacatgcaccacaaaaatgcatatgctaatgcatgatcatgaacaatgaagactaaatctagccacttaggcacaacaatgctatatgatatt 114  Q
    ||||||||||| |||||||| | ||||||||||||||||||||||||||| |||||||||||||||  || || ||||||||||||||| ||||||||||    
T  40841214 gccgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaa-aatgaagactaaatcccgcaacataggcacaacaatgcaatatgatatt 40841312  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 35840720 - 35840679
Alignment:
Q  73 actaaatctagccacttaggcacaacaatgctatatgatatt 114  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  35840720 actaaatcttgccacttaggcacaacaatgcaatatgatatt 35840679  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 3189128 - 3189175
Alignment:
Q  16 ccgccacacatgcaccacaaaaatgcatatgctaatgcatgatcatgaa 64  Q
    |||||||||| |||||||| ||||||||||| | |||||||||||||||    
T  3189128 ccgccacacaagcaccacacaaatgcatatg-tcatgcatgatcatgaa 3189175  T

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Target: chr6 (Bit Score: 60; Significance: 4e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 32449955 - 32450049
Alignment:
Q  16 ccgccacacatgcaccacaaaaatgcatatgctaatgcatgatcatgaacaatgaagactaaatctagccacttaggcacaacaatgctatatgat 111  Q
    |||||||||| |||||||| | ||||||||||||||||||||||||||| |||||||| ||||||  ||||||||||||||||||||| |||||||    
T  32449955 ccgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaa-aatgaagattaaatcccgccacttaggcacaacaatgcaatatgat 32450049  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 26182410 - 26182476
Alignment:
Q  48 taatgcatgatcatgaacaatgaagactaaatctagccacttaggcacaacaatgctatatgatatta 115  Q
    ||||||||||||||||| |||||||||||||||  |||||   ||||||||||||| |||||||||||    
T  26182410 taatgcatgatcatgaa-aatgaagactaaatcctgccacagtggcacaacaatgcaatatgatatta 26182476  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 24163387 - 24163325
Alignment:
Q  28 caccacaaaaatgcatatgctaatgcatgatcatgaacaatgaagactaaatctagccactta 90  Q
    ||||||| | || ||||||||||||||| |||||||| |||||||||||||||  ||||||||    
T  24163387 caccacacagatacatatgctaatgcataatcatgaaaaatgaagactaaatcccgccactta 24163325  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 10751309 - 10751391
Alignment:
Q  27 gcaccacaaaaatgcatatgctaatgcatgatcatgaacaatgaagactaaatctagccacttaggcacaacaatgctatatgat 111  Q
    |||||||| | |||||||||| | |||||||||||||| |||| |||||||| |  |||||| |||||||| ||||| |||||||    
T  10751309 gcaccacacagatgcatatgcca-tgcatgatcatgaa-aatgcagactaaaacccgccactaaggcacaataatgcaatatgat 10751391  T

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Target: chr1 (Bit Score: 52; Significance: 3e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 35761742 - 35761828
Alignment:
Q  16 ccgccacacatgcaccacaaaaatgcatatgctaatgcatgatcatgaacaatgaagactaaatctagccacttaggcacaacaatgc 103  Q
    |||||||||| |||||||| | ||||||||||||||||||||||||||| |||||||| |||||   |||||||||||||||||||||    
T  35761742 ccgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaa-aatgaagattaaattccgccacttaggcacaacaatgc 35761828  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 19198452 - 19198546
Alignment:
Q  16 ccgccacacatgcaccacaaaaatgcatatgctaatgcatgatcatgaacaatgaagactaaatctagccacttaggcacaacaatgctatatgat 111  Q
    |||||||||| |||||||| | ||||||||| |||||||||||||| || |||||||| |||||   |||||||||| |||||||||| |||||||    
T  19198452 ccgccacacaggcaccacacagatgcatatgttaatgcatgatcat-aaaaatgaagattaaattccgccacttaggtacaacaatgcaatatgat 19198546  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 26317662 - 26317626
Alignment:
Q  42 atatgctaatgcatgatcatgaacaatgaagactaaat 79  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  26317662 atatgctaatgcatgatcatgaa-aatgaagactaaat 26317626  T

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Target: chr1; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 114
Target Start/End: Complemental strand, 6836305 - 6836274
Alignment:
Q  83 gccacttaggcacaacaatgctatatgatatt 114  Q
    ||||||||||||||||||||| ||||||||||    
T  6836305 gccacttaggcacaacaatgcaatatgatatt 6836274  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 28266883 - 28266947
Alignment:
Q  50 atgcatgatcatgaacaatgaagactaaatctagccacttaggcacaacaatgctatatgatatta 115  Q
    |||||||||||| || |||||||||||||||  |||||  |||||||||||||| |||||||||||    
T  28266883 atgcatgatcattaa-aatgaagactaaatcccgccacacaggcacaacaatgcaatatgatatta 28266947  T

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Target: chr2; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 114
Target Start/End: Complemental strand, 44788907 - 44788876
Alignment:
Q  83 gccacttaggcacaacaatgctatatgatatt 114  Q
    ||||||||||||||||||||| ||||||||||    
T  44788907 gccacttaggcacaacaatgcaatatgatatt 44788876  T

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