View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5852-41 (Length: 78)
Name: Solexa-NF5852-41
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5852-41 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 68; Significance: 5e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-31
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 50750100 - 50750025
Alignment:
| Q |
3 |
catagggaactggaaatcgtttcagcaagtagtattcgacaacagacatagacgaggagaatgtcattgcaaaagt |
78 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50750100 |
cataaggaactggaaatcgtttcagcaagtagtattccacaacagacatagacgaggagaatgtcattgcaaaagt |
50750025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 50812722 - 50812786
Alignment:
| Q |
14 |
ggaaatcgtttcagcaagtagtattcgacaacagacatagacgaggagaatgtcattgcaaaagt |
78 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50812722 |
ggaaatcgtttcagcaaatagtattctacaacagacatagacgaggagaatgtcattgcaaaagt |
50812786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 50863142 - 50863078
Alignment:
| Q |
14 |
ggaaatcgtttcagcaagtagtattcgacaacagacatagacgaggagaatgtcattgcaaaagt |
78 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50863142 |
ggaaatcgtttcagcaaatagtattctacaacagacatagacgaggagaatgtcattgcaaaagt |
50863078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 36471957 - 36472032
Alignment:
| Q |
3 |
catagggaactggaaatcgtttcagcaagtagtattcgacaacagacatagacgaggagaatgtcattgcaaaagt |
78 |
Q |
| |
|
|||| |||| |||||| |||||||| | ||| ||||| || ||||||||||| | || ||||||||||||||||| |
|
|
| T |
36471957 |
catatggaattggaaaacgtttcagaaggtaatattccaccacagacatagatgcagaaaatgtcattgcaaaagt |
36472032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University