View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5852-42 (Length: 78)
Name: Solexa-NF5852-42
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5852-42 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 78; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-37
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 47340305 - 47340228
Alignment:
| Q |
1 |
acagaccattactagtggttgacttgtcttgaaacagagcactaccataccaagtaccaagtggtggtagcttgtagg |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47340305 |
acagaccattactagtggttgacttgtcttgaaacagagcactaccataccaagtaccaagtggtggtagcttgtagg |
47340228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 3804280 - 3804357
Alignment:
| Q |
1 |
acagaccattactagtggttgacttgtcttgaaacagagcactaccataccaagtaccaagtggtggtagcttgtagg |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3804280 |
acagaccattactagtggttgacttgtcttgaaacagagcactaccataccaagtaccaagtggtggtagcttctagg |
3804357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University