View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5852-5 (Length: 163)
Name: Solexa-NF5852-5
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5852-5 |
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| [»] scaffold0474 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: scaffold0474 (Bit Score: 157; Significance: 9e-84; HSPs: 1)
Name: scaffold0474
Description:
Target: scaffold0474; HSP #1
Raw Score: 157; E-Value: 9e-84
Query Start/End: Original strand, 7 - 163
Target Start/End: Original strand, 8659 - 8815
Alignment:
| Q |
7 |
cagagaccagaaattatcaaatgaaaatcaacaaacctaggggccataagttcaaattgttcccaaacaattcaaggatctccagagatctgagttttga |
106 |
Q |
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| T |
8659 |
cagagaccagaaattatcaaatgaaaatcaacaaacctaggggccataagttcaaattgttcccaaacaattcaaggatctccagagatctgagttttga |
8758 |
T |
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| Q |
107 |
tatatctagcaatatataaacatacatggttggtggtctatatgtttttcaaacaaa |
163 |
Q |
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| T |
8759 |
tatatctagcaatatataaacatacatggttggtggtctatatgtttttcaaacaaa |
8815 |
T |
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Target: chr7 (Bit Score: 64; Significance: 3e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 24260072 - 24260175
Alignment:
| Q |
60 |
aaattgttcccaaacaattcaaggatctccagagatctgagttttgatatatctagcaatatataaacatacatggttggtggtctatatgtttttcaaa |
159 |
Q |
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| T |
24260072 |
aaattgttccaagataagtcaaggatctccaaagacctcagttttgatatatctagcaacatataaacatacatgattggaggtctatatgtttttcaaa |
24260171 |
T |
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| Q |
160 |
caaa |
163 |
Q |
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|||| |
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| T |
24260172 |
caaa |
24260175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 24260378 - 24260538
Alignment:
| Q |
8 |
agagaccagaaattatcaaatgaaaat-caacaaacctaggggccataagttcaaattgttcccaaacaattcaaggatctccagagatctgagttttga |
106 |
Q |
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| T |
24260378 |
agagaccagaaattatcaaatgagatgacaacaaacctagggtccataagttcatattgtttgaagataagtcaaggatctccaaagacctcagttttga |
24260477 |
T |
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| Q |
107 |
tatatctagcaatatat----aaacatacatggttggtggtctatatgtttttcaaacaaa |
163 |
Q |
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| T |
24260478 |
tatatctatcgatacatgataaaacatacatcattggttgtctatatggttttcaaacaaa |
24260538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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