View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5852-7 (Length: 146)
Name: Solexa-NF5852-7
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5852-7 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 6e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 6e-66
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 50188823 - 50188965
Alignment:
| Q |
4 |
gagaagaatctatacaagccattttactagcttgtaactgcgcaaagagtcgagctagttgatctaacactggttgttgccttaaaacatctggttctgc |
103 |
Q |
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| T |
50188823 |
gagaagaatctatataagccattttactagcttgtaactgcgcaaaaagtcgagctagttgatctaacaccggttgttgccttaaaacatctggttctgc |
50188922 |
T |
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| Q |
104 |
agagaatatgccttctcggaataatttgttcatgtacaagcat |
146 |
Q |
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| T |
50188923 |
agaaaatatgccttctcggaataatttgttcatgtacaagcat |
50188965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 8e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 1704528 - 1704386
Alignment:
| Q |
4 |
gagaagaatctatacaagccattttactagcttgtaactgcgcaaagagtcgagctagttgatctaacactggttgttgccttaaaacatctggttctgc |
103 |
Q |
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| T |
1704528 |
gagaagaatctatgaaagcctttttacttaaatgcaactgagcaaaaagccgagctagttgatctaacactggttgttgctgaaaaatatctggttctac |
1704429 |
T |
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| Q |
104 |
agagaatatgccttctcggaataatttgttcatgtacaagcat |
146 |
Q |
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| T |
1704428 |
agaaaataatccttctcgaaaacgtttattcatatacaagcat |
1704386 |
T |
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