View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5852-8 (Length: 145)
Name: Solexa-NF5852-8
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5852-8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 5e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 8522225 - 8522090
Alignment:
| Q |
10 |
tttcagttgtaagtttgtggtctcaggtctgtttataagtgcacgccacatgttgtgttatataataaaattccaagttcatgtatatgttagtgtataa |
109 |
Q |
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| T |
8522225 |
tttcagttgtaagtttatggtctcaggtctgtttataagtgcatgccacaagttgtgttatataataaaattccaagttcatgtatatgttagtgtataa |
8522126 |
T |
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| Q |
110 |
aatataattcaaatttatacgacccttttacctttg |
145 |
Q |
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| T |
8522125 |
aatataattcaaatttatatgacctttttaactttg |
8522090 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 42116854 - 42116793
Alignment:
| Q |
39 |
tgtttataagtgcacgccacatgttgtgttatataataaaattccaagttcatgtatatgtt |
100 |
Q |
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| T |
42116854 |
tgtttacatgtgcatgccacaagatgtgttatataataaaattccaagtttatatatatgtt |
42116793 |
T |
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