View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5852-9 (Length: 144)
Name: Solexa-NF5852-9
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5852-9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 1e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 1e-73
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 43111100 - 43111239
Alignment:
| Q |
5 |
atgaaagggtatttatagtgaacaatacaaggtgtgaccgtgaagcctaactcaaaaataacaaaggttttgattccaattccaatgggatattacaaat |
104 |
Q |
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| T |
43111100 |
atgaaagggtatttatagtgaacaatacaaggtgtgaccgtgaagcctaactcaaaaataacaaaggttttgattccaattccaatgggatattacaaat |
43111199 |
T |
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| Q |
105 |
tgtggttttgattcttaattaaattgaattacaaccgttg |
144 |
Q |
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| T |
43111200 |
tgtggttttgattcttaattaaattgaattacaaccgttg |
43111239 |
T |
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