View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5853-1 (Length: 246)

Name: Solexa-NF5853-1
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5853-1
Solexa-NF5853-1
[»] chr1 (13 HSPs)
chr1 (8-228)||(47607280-47607500)
chr1 (8-144)||(47593015-47593151)
chr1 (41-143)||(47584305-47584407)
chr1 (23-143)||(47574587-47574707)
chr1 (41-140)||(47287598-47287697)
chr1 (56-134)||(47701365-47701443)
chr1 (56-140)||(47698384-47698468)
chr1 (56-138)||(6525297-6525379)
chr1 (56-134)||(47758515-47758593)
chr1 (56-131)||(47711620-47711695)
chr1 (56-134)||(6497785-6497863)
chr1 (56-134)||(47636537-47636615)
chr1 (56-128)||(47716374-47716446)
[»] chr6 (12 HSPs)
chr6 (18-128)||(21968265-21968375)
chr6 (23-159)||(18995739-18995875)
chr6 (23-146)||(22206808-22206931)
chr6 (18-128)||(22086149-22086259)
chr6 (18-146)||(18991029-18991157)
chr6 (23-146)||(18979677-18979800)
chr6 (23-146)||(20236074-20236197)
chr6 (23-146)||(22130058-22130181)
chr6 (18-143)||(20233203-20233328)
chr6 (18-143)||(22127187-22127312)
chr6 (18-146)||(20083973-20084101)
chr6 (18-146)||(24386908-24387036)
[»] chr8 (2 HSPs)
chr8 (28-146)||(10401660-10401778)
chr8 (79-140)||(23555665-23555726)
[»] scaffold0074 (1 HSPs)
scaffold0074 (23-159)||(49584-49720)
[»] scaffold0007 (1 HSPs)
scaffold0007 (23-146)||(7129-7252)
[»] chr3 (5 HSPs)
chr3 (79-140)||(13855152-13855213)
chr3 (58-134)||(1077346-1077422)
chr3 (58-134)||(1050443-1050519)
chr3 (58-134)||(1091186-1091262)
chr3 (23-151)||(36067054-36067182)
[»] chr5 (4 HSPs)
chr5 (18-145)||(470057-470184)
chr5 (47-134)||(454543-454630)
chr5 (53-128)||(9102756-9102831)
chr5 (107-140)||(28433209-28433242)
[»] scaffold0090 (1 HSPs)
scaffold0090 (79-140)||(8284-8345)
[»] chr4 (7 HSPs)
chr4 (103-140)||(36370594-36370631)
chr4 (103-140)||(36376366-36376403)
chr4 (103-140)||(36389608-36389645)
chr4 (103-140)||(36407256-36407293)
chr4 (103-140)||(36412379-36412416)
chr4 (103-140)||(36429411-36429448)
chr4 (103-140)||(36435864-36435901)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 47607280 - 47607500
Alignment:
Q  8 gaactgctttaggagttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47607280 gaactgctttaggagttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaa 47607379  T
Q  108 tcctaaaatctcagattttggcatggctagaattgttgacattggccaagatcgcgctaaaactaccagaattgtgggaacatagtaagtttagaatttt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47607380 tcctaaaatctcagattttggcatggctagaattgttgacattggccaagatcgcgctaaaactaccagaattgtgggaacatagtaagtttagaatttt 47607479  T
Q  208 tcttaattatagtcatatttt 228  Q
    |||||||||||||||||||||    
T  47607480 tcttaattatagtcatatttt 47607500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 47593015 - 47593151
Alignment:
Q  8 gaactgctttaggagttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaa 107  Q
    |||| ||||||||| |||||||||| ||||| |||||||| || |||||||||||||| ||||| |||||||||||| || || | |||||| |||||||    
T  47593015 gaacggctttaggaattctttatttgcatgaatattctcgtctcaaagttatacatcgggatctcaaacctagtaatgttctactggatgaaaatatgaa 47593114  T
Q  108 tcctaaaatctcagattttggcatggctagaattgtt 144  Q
    ||||||||| ||||||||||| |||||||| ||||||    
T  47593115 tcctaaaatatcagattttggaatggctaggattgtt 47593151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 143
Target Start/End: Original strand, 47584305 - 47584407
Alignment:
Q  41 attctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttggcatggctagaat 140  Q
    ||||||| || ||| | ||||||||||||||||||||||| ||| | |||||||||    | ||||| || ||||| |||||||||||||||||||||||    
T  47584305 attctcgcctcaaaataatacatcgtgatcttaaacctagcaatgtcttattagatagtaacatgaacccaaaaatatcagattttggcatggctagaat 47584404  T
Q  141 tgt 143  Q
    |||    
T  47584405 tgt 47584407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 47574587 - 47574707
Alignment:
Q  23 ttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcaga 122  Q
    |||||||| | |||||  ||||||| || ||| | |||||||||||||| ||||||||  || |  | |||||||   |||||||||| ||||| |||||    
T  47574587 ttctttatctccatgaagattctcgcctcaaaatcatacatcgtgatctgaaacctagcgatgtcctgttagatggtaatatgaatccaaaaatatcaga 47574686  T
Q  123 ttttggcatggctagaattgt 143  Q
    |||||||||||||||||||||    
T  47574687 ttttggcatggctagaattgt 47574707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 47287598 - 47287697
Alignment:
Q  41 attctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttggcatggctagaat 140  Q
    |||||||||| | | | |||||||| ||||||||| |||||||||| |||||||||||  || | ||||| ||||| ||||||||||| ||||| |||||    
T  47287598 attctcgacttagaatcatacatcgcgatcttaaagctagtaatatattattagatgagaatttaaatcccaaaatttcagattttgggatggcaagaat 47287697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 47701443 - 47701365
Alignment:
Q  56 ttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttggcatggc 134  Q
    |||||||||||||||||||| | ||||| ||| | || |||||| | |||||||||||||| ||||||||||| |||||    
T  47701443 ttatacatcgtgatcttaaagcaagtaacattctcttggatgaaaaaatgaatcctaaaatatcagattttggtatggc 47701365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 47698384 - 47698468
Alignment:
Q  56 ttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttggcatggctagaat 140  Q
    |||| ||||||||||| |||||||||||| | || ||||||||  | |||||||||||||| || ||||| |||||||| |||||    
T  47698384 ttattcatcgtgatctcaaacctagtaatgtattgttagatgataacatgaatcctaaaatatctgatttcggcatggcaagaat 47698468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 6525297 - 6525379
Alignment:
Q  56 ttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttggcatggctaga 138  Q
    |||| ||||||||||| ||| | || |||||| | ||||||||| | ||||||||||| ||  ||||||||||||||||||||    
T  6525297 ttattcatcgtgatctcaaagcaagcaatattctcttagatgaagagatgaatcctaagatagcagattttggcatggctaga 6525379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 47758593 - 47758515
Alignment:
Q  56 ttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttggcatggc 134  Q
    |||||||||||||||||||| | ||||| ||| | ||||| ||| |  ||||||||||||| ||||||||||| |||||    
T  47758593 ttatacatcgtgatcttaaagcgagtaacattctcttagacgaaaagttgaatcctaaaatatcagattttggaatggc 47758515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 131
Target Start/End: Complemental strand, 47711695 - 47711620
Alignment:
Q  56 ttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttggcat 131  Q
    |||||||||||||||||||| | ||||| ||| | || |||||| |  ||||||||||||| ||||| ||||||||    
T  47711695 ttatacatcgtgatcttaaagcaagtaacattctcttggatgaaaagttgaatcctaaaatatcagactttggcat 47711620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 6497863 - 6497785
Alignment:
Q  56 ttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttggcatggc 134  Q
    |||| ||||||||||| ||| | ||||| ||| | ||||||||| | ||||||||||| || || ||||||||||||||    
T  6497863 ttattcatcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggc 6497785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 47636537 - 47636615
Alignment:
Q  56 ttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttggcatggc 134  Q
    |||| ||||||||||||||| |||| || || || || |||| | |||||||||| |||||||| || |||||||||||    
T  47636537 ttattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcatggc 47636615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 47716446 - 47716374
Alignment:
Q  56 ttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttgg 128  Q
    |||||||||||||||||||| |  |||| ||| | ||||| ||| |  ||||||||||||| |||||||||||    
T  47716446 ttatacatcgtgatcttaaagcgggtaacattctcttagacgaaaaattgaatcctaaaatatcagattttgg 47716374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 21968375 - 21968265
Alignment:
Q  18 aggagttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatc 117  Q
    |||| |||||||||| |||||  |||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||| |||||||||     
T  21968375 aggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaaatatgattcctaaaatt 21968276  T
Q  118 tcagattttgg 128  Q
    |||||||||||    
T  21968275 tcagattttgg 21968265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 18995875 - 18995739
Alignment:
Q  23 ttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcaga 122  Q
    |||||||||| |||||  ||||||||||||||||||||||||| ||||| |||||||| |||||| ||||| | ||| |||||| ||||||||| |||||    
T  18995875 ttctttatttgcatgaacattctcgactaaaagttatacatcgggatctcaaacctagcaatattctattatacgaaaatatgattcctaaaatttcaga 18995776  T
Q  123 ttttggcatggctagaattgttgacattggccaagat 159  Q
    ||||||  ||||| |||||||||| ||| | ||||||    
T  18995775 ttttggtttggctcgaattgttgaaattagtcaagat 18995739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 22206808 - 22206931
Alignment:
Q  23 ttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcaga 122  Q
    |||||||||| |||||  |||||||||| |||||||||||||| ||||| |||||||| |||||| ||||||||||| |||||| ||||||||| || ||    
T  22206808 ttctttatttgcatgaaaattctcgactcaaagttatacatcgggatctcaaacctagcaatattctattagatgaaaatatgattcctaaaatttctga 22206907  T
Q  123 ttttggcatggctagaattgttga 146  Q
    ||||||  ||||| ||||||||||    
T  22206908 ttttggtttggctcgaattgttga 22206931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 22086259 - 22086149
Alignment:
Q  18 aggagttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatc 117  Q
    |||| |||||||||| |||||  |||||||||| |||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||| ||||| |||     
T  22086259 aggaattctttatttgcatgaacattctcgactcaaagttatacatcgtgatctcaaaccaagtaatattctattagatgaaaatatgattcctagaatt 22086160  T
Q  118 tcagattttgg 128  Q
    |||||||||||    
T  22086159 tcagattttgg 22086149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 18991157 - 18991029
Alignment:
Q  18 aggagttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatc 117  Q
    |||| |||||||||| |||||  |||||||||| |||||||||||||| ||||| |||||||| |||||| ||||||| ||| |||||| |||||||||     
T  18991157 aggacttctttatttgcatgaacattctcgactcaaagttatacatcgggatctcaaacctagcaatattctattagacgaaaatatgattcctaaaatt 18991058  T
Q  118 tcagattttggcatggctagaattgttga 146  Q
    |||||||||||  ||||| ||||| ||||    
T  18991057 tcagattttggtttggctcgaattattga 18991029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 18979800 - 18979677
Alignment:
Q  23 ttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcaga 122  Q
    |||||||||| |||||  |||||||||| |||||||||||||| ||| | |||||||| |||||| ||||||| ||| |||||| ||||||||| |||||    
T  18979800 ttctttatttgcatgaacattctcgactcaaagttatacatcgggatgtcaaacctagcaatattctattagacgaaaatatgattcctaaaatttcaga 18979701  T
Q  123 ttttggcatggctagaattgttga 146  Q
    ||||||  ||||| ||||||||||    
T  18979700 ttttggtttggctcgaattgttga 18979677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 20236197 - 20236074
Alignment:
Q  23 ttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcaga 122  Q
    |||||||||| |||||| |||| || || |||||||||||||| ||||| |||||||| |||||| ||||||| ||| |||||| ||||||||| || ||    
T  20236197 ttctttatttgcatgatcattcacggctcaaagttatacatcgggatctcaaacctagcaatattctattagacgaaaatatgattcctaaaatttctga 20236098  T
Q  123 ttttggcatggctagaattgttga 146  Q
    ||||||  ||||| ||||||||||    
T  20236097 ttttggtttggctcgaattgttga 20236074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 22130181 - 22130058
Alignment:
Q  23 ttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcaga 122  Q
    |||||||||| |||||| |||| || || |||||||||||||| ||||| |||||||| |||||| ||||||| ||| |||||| ||||||||| || ||    
T  22130181 ttctttatttgcatgatcattcacggctcaaagttatacatcgggatctcaaacctagcaatattctattagacgaaaatatgattcctaaaatttctga 22130082  T
Q  123 ttttggcatggctagaattgttga 146  Q
    ||||||  ||||| ||||||||||    
T  22130081 ttttggtttggctcgaattgttga 22130058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 20233203 - 20233328
Alignment:
Q  18 aggagttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatc 117  Q
    |||| |||| ||||| |||||  |||||||||| |||||||| |||||||| || ||||||||||||||||||||||||||  | |||| ||| |||||     
T  20233203 aggaattctctatttgcatgaacattctcgactcaaagttattcatcgtgacctcaaacctagtaatattttattagatgagaacatgattccaaaaata 20233302  T
Q  118 tcagattttggcatggctagaattgt 143  Q
    |||||||||||  | |||||||||||    
T  20233303 tcagattttggtcttgctagaattgt 20233328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 22127187 - 22127312
Alignment:
Q  18 aggagttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatc 117  Q
    |||| |||| ||||| |||||  |||||||||| |||||||| |||||||| || ||||||||||||||||||||||||||  | |||| ||| |||||     
T  22127187 aggaattctctatttgcatgaacattctcgactcaaagttattcatcgtgacctcaaacctagtaatattttattagatgagaacatgattccaaaaata 22127286  T
Q  118 tcagattttggcatggctagaattgt 143  Q
    |||||||||||  | |||||||||||    
T  22127287 tcagattttggtcttgctagaattgt 22127312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 20084101 - 20083973
Alignment:
Q  18 aggagttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatc 117  Q
    |||| |||||||||| |||||  |||| ||||| ||||||||||| || ||||| |||||||| |||||| ||||||| ||| |||||| | |||||||     
T  20084101 aggacttctttatttgcatgaacattcccgactgaaagttatacaccgggatctcaaacctagcaatattctattagacgaaaatatgattactaaaatt 20084002  T
Q  118 tcagattttggcatggctagaattgttga 146  Q
    |||||||||||  ||||| ||||||||||    
T  20084001 tcagattttggtttggctcgaattgttga 20083973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 24386908 - 24387036
Alignment:
Q  18 aggagttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatc 117  Q
    |||| |||||||||| |||||  |||||||||| ||||||||||||||  |||| |||||||| |||||| ||||||| ||| |||||| | |||||||     
T  24386908 aggacttctttatttgcatgaacattctcgacttaaagttatacatcggaatctcaaacctagcaatattctattagacgaaaatatgatttctaaaatt 24387007  T
Q  118 tcagattttggcatggctagaattgttga 146  Q
    ||| ||||||   ||||| ||||||||||    
T  24387008 tcatattttgttttggctcgaattgttga 24387036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 10401778 - 10401660
Alignment:
Q  28 tatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttg 127  Q
    |||||||||||  |||||||||| |||||||| || ||||| || ||||||||||||||||||||||||||| |||||| ||| ||||| ||||||||||    
T  10401778 tatttacatgaacattctcgactcaaagttattcaccgtgacctcaaacctagtaatattttattagatgaaaatatgattccaaaaatatcagattttg 10401679  T
Q  128 gcatggctagaattgttga 146  Q
    |  | ||||||||||||||    
T  10401678 gtcttgctagaattgttga 10401660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 23555665 - 23555726
Alignment:
Q  79 agtaatattttattagatgaacatatgaatcctaaaatctcagattttggcatggctagaat 140  Q
    |||||||||||||||||  |  |||||||||| ||||| |||||||||||  ||||||||||    
T  23555665 agtaatattttattagacaacgatatgaatccaaaaatttcagattttggtttggctagaat 23555726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 49584 - 49720
Alignment:
Q  23 ttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcaga 122  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||| |||||| ||||  | ||| |||||| ||||||||| |||||    
T  49584 ttctttatttgcatgaatattctcgactcaaagttatacatcgggatctcaaacctagcaatattctattgaacgaaaatatgattcctaaaatttcaga 49683  T
Q  123 ttttggcatggctagaattgttgacattggccaagat 159  Q
    ||||||  ||||| |||||||||| ||| | ||||||    
T  49684 ttttggtttggctcgaattgttgaaattagtcaagat 49720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 7129 - 7252
Alignment:
Q  23 ttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcaga 122  Q
    |||||||||| |||||| |||| ||||| |||||||||||||| ||||| |||||||| |||||| ||||||| ||| |||||| ||||||||| |||||    
T  7129 ttctttatttgcatgatcattcacgactcaaagttatacatcgggatctcaaacctagcaatattctattagacgaaaatatgattcctaaaatttcaga 7228  T
Q  123 ttttggcatggctagaattgttga 146  Q
    ||||||  ||||| | ||||||||    
T  7229 ttttggtttggctcggattgttga 7252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 13855152 - 13855213
Alignment:
Q  79 agtaatattttattagatgaacatatgaatcctaaaatctcagattttggcatggctagaat 140  Q
    ||||||||||||||||||||  |||||||||| ||||| ||||||||||| |||||||||||    
T  13855152 agtaatattttattagatgacgatatgaatcccaaaatttcagattttggtatggctagaat 13855213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 1077346 - 1077422
Alignment:
Q  58 atacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttggcatggc 134  Q
    |||||||| ||||| ||||| |||||||||||||||||  |  |||||||||| ||||| |||||||||||| ||||    
T  1077346 atacatcgagatctaaaaccaagtaatattttattagacaatgatatgaatccaaaaatatcagattttggcttggc 1077422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 1050443 - 1050519
Alignment:
Q  58 atacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttggcatggc 134  Q
    |||||||| ||||| ||||| |||||||||||||||||  |  |||||||| | ||||| |||||||||||| ||||    
T  1050443 atacatcgagatctaaaaccaagtaatattttattagacaatgatatgaatgccaaaatatcagattttggcttggc 1050519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 1091186 - 1091262
Alignment:
Q  58 atacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttggcatggc 134  Q
    |||||||| ||||| ||||| |||||||||||||||||  |  |||||||| | ||||| |||||||||||| ||||    
T  1091186 atacatcgagatctaaaaccaagtaatattttattagacaatgatatgaatgccaaaatatcagattttggcttggc 1091262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 36067182 - 36067054
Alignment:
Q  23 ttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcaga 122  Q
    |||||||| |||||||  ||||||  |||||| | |||||  ||||||||||||| || || ||||| || |||||  | |||||| | || || |||||    
T  36067182 ttctttatctacatgaggattctcatctaaaaatcatacactgtgatcttaaacccagcaacattttgttggatgacaaaatgaatgcaaagatatcaga 36067083  T
Q  123 ttttggcatggctagaattgttgacattg 151  Q
    ||||||| |||| || ||||||| |||||    
T  36067082 ttttggcttggcaaggattgttgccattg 36067054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 470184 - 470057
Alignment:
Q  18 aggagttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatc 117  Q
    |||| ||||||| |||||||| |||||  |||| ||||| |||||||| ||||| |||||||| ||| | || ||||||||  | |||||||| |||||     
T  470184 aggaattctttacttacatgagtattcaagacttaaagtcatacatcgagatctcaaacctagcaatgtattgttagatgacaaaatgaatccaaaaata 470085  T
Q  118 tcagattttggcatggctagaattgttg 145  Q
    |||||||||||  |||| ||||| ||||    
T  470084 tcagattttggtttggcaagaatagttg 470057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 454630 - 454543
Alignment:
Q  47 gactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttggcatggc 134  Q
    |||| ||||| |||||||||||||| |||||||| ||||| || |||||| |  |||||||||| ||||| ||||| ||||| |||||    
T  454630 gacttaaagtcatacatcgtgatctcaaacctagcaatatattgttagataagaatatgaatccaaaaatatcagactttggtatggc 454543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 9102756 - 9102831
Alignment:
Q  53 aagttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttgg 128  Q
    ||||||||||| | ||||| |||||||||||||||  ||||| |||| |||||| ||||||||| | |||||||||    
T  9102756 aagttatacatagcgatctcaaacctagtaatattccattagctgaaaatatgactcctaaaattttagattttgg 9102831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 140
Target Start/End: Original strand, 28433209 - 28433242
Alignment:
Q  107 atcctaaaatctcagattttggcatggctagaat 140  Q
    |||||||||| |||||||||||||||||||||||    
T  28433209 atcctaaaatttcagattttggcatggctagaat 28433242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 8345 - 8284
Alignment:
Q  79 agtaatattttattagatgaacatatgaatcctaaaatctcagattttggcatggctagaat 140  Q
    |||||||||||||| || ||  |||||||||| ||||| |||||||||||||||||||||||    
T  8345 agtaatattttattggacgatgatatgaatcccaaaatttcagattttggcatggctagaat 8284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 36370594 - 36370631
Alignment:
Q  103 atgaatcctaaaatctcagattttggcatggctagaat 140  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  36370594 atgaatcccaaaatctcagattttggtatggctagaat 36370631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 36376366 - 36376403
Alignment:
Q  103 atgaatcctaaaatctcagattttggcatggctagaat 140  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  36376366 atgaatcccaaaatctcagattttggtatggctagaat 36376403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 36389608 - 36389645
Alignment:
Q  103 atgaatcctaaaatctcagattttggcatggctagaat 140  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  36389608 atgaaccctaaaatctcagattttggtatggctagaat 36389645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 36407256 - 36407293
Alignment:
Q  103 atgaatcctaaaatctcagattttggcatggctagaat 140  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  36407256 atgaatcccaaaatctcagattttggtatggctagaat 36407293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 36412379 - 36412416
Alignment:
Q  103 atgaatcctaaaatctcagattttggcatggctagaat 140  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  36412379 atgaatcccaaaatctcagattttggtatggctagaat 36412416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 36429411 - 36429448
Alignment:
Q  103 atgaatcctaaaatctcagattttggcatggctagaat 140  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  36429411 atgaatcccaaaatctcagattttggtatggctagaat 36429448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 36435864 - 36435901
Alignment:
Q  103 atgaatcctaaaatctcagattttggcatggctagaat 140  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  36435864 atgaatcccaaaatctcagattttggtatggctagaat 36435901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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