View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5853-12 (Length: 144)
Name: Solexa-NF5853-12
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5853-12 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 1e-60; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 35241872 - 35242009
Alignment:
| Q |
8 |
aagatttgattcagagatttcaagttcaacaaaaaggattgagagaaagattgagggcgattcacctgtttctggaga-attgagagaaagccaaaactt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
35241872 |
aagatttgattcagagatttcaagttcaacaaaaaggattgagataaagattgagggcgattcacctgtttctggaaagattgagagaaagccaaaactt |
35241971 |
T |
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| Q |
107 |
tttctggagagattcatagttcctgaagattggagtgt |
144 |
Q |
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| T |
35241972 |
tttctggagagattcatagttcctgaagattcgagtgt |
35242009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 14008684 - 14008554
Alignment:
| Q |
8 |
aagatttgattcagagatttcaagttcaacaaaaaggattgagagaaagattgagggcgattcacctgtttctggaga-attgagagaaagccaaaactt |
106 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
14008684 |
aagatttggttcagagatttcaagttcaacgaaaaggattgagaaaaagattgagggcgattcacctgtttcttgagagattgagagaaagccaaaactt |
14008585 |
T |
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| Q |
107 |
tttctggagagattcatagttcctgaagatt |
137 |
Q |
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| T |
14008584 |
tttatggagagattcatagtttctgaagatt |
14008554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 42935643 - 42935728
Alignment:
| Q |
53 |
aaagattgagggcgattcacctgtttctggaga-attgagagaaagccaaaactttttctggagagattcatagttcctgaagatt |
137 |
Q |
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| T |
42935643 |
aaagattgagggcgagtcacctgtttcttgagagattgagagaaagccaaaactttttatggagagattcatagtttctgaagatt |
42935728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 62; Significance: 4e-27; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 11128 - 11043
Alignment:
| Q |
53 |
aaagattgagggcgattcacctgtttctggaga-attgagagaaagccaaaactttttctggagagattcatagttcctgaagatt |
137 |
Q |
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||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
11128 |
aaagattgagggcgagtcacctgtttcttgagagattgagagaaagccaaaactttttatggagagattcatagtttctgaagatt |
11043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 49020350 - 49020289
Alignment:
| Q |
11 |
atttgattcagagatttcaagttcaacaaaaaggattgagagaaagattgagggcgattcac |
72 |
Q |
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| T |
49020350 |
atttgattcaaagatttcaaattcaatgaaaaagatggagagaaagattgagggcgattcac |
49020289 |
T |
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