View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5853-14 (Length: 144)
Name: Solexa-NF5853-14
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5853-14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 123; Significance: 1e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 34749642 - 34749764
Alignment:
| Q |
1 |
aagcataggtcaaagctgctgctaattctatttcatttgctccttctgcagccacacaccataccttacctttgtatggcacattgttctttggagcttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34749642 |
aagcataggtcaaagctgctgctaattctatttcatttgctccttctgcagccacacaccataccttacctttgtatggcacattgttctttggagcttg |
34749741 |
T |
|
| Q |
101 |
taatggtgcataatctgtgttag |
123 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
34749742 |
taatggtgcataatctgtgttag |
34749764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 6e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 26593023 - 26593141
Alignment:
| Q |
1 |
aagcataggtcaaagctgctgctaattctatttcatttgctccttctgcagccacacaccataccttacctttgtatggcacattgttctttggagcttg |
100 |
Q |
| |
|
||||||| | |||||||||||| ||||| | ||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
26593023 |
aagcatatgacaaagctgctgccaattccacttcatttactccttctgcaaccatacaccataccttacccttgtatggcacattgttctttggagctgg |
26593122 |
T |
|
| Q |
101 |
taatggtgcataatctgtg |
119 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
26593123 |
taatggtgcatagtctgtg |
26593141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University