View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5853-18 (Length: 138)

Name: Solexa-NF5853-18
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5853-18
Solexa-NF5853-18
[»] chr2 (10 HSPs)
chr2 (1-138)||(16657311-16657448)
chr2 (1-117)||(43625670-43625786)
chr2 (2-132)||(16661787-16661917)
chr2 (1-132)||(7542469-7542600)
chr2 (1-87)||(12234977-12235063)
chr2 (1-132)||(11999637-11999768)
chr2 (1-132)||(12245200-12245331)
chr2 (1-132)||(14703651-14703782)
chr2 (1-138)||(17716487-17716624)
chr2 (101-132)||(12258475-12258506)
[»] chr7 (32 HSPs)
chr7 (1-132)||(13333250-13333381)
chr7 (1-132)||(8667662-8667793)
chr7 (1-138)||(8659600-8659737)
chr7 (1-132)||(8671424-8671555)
chr7 (1-132)||(10494168-10494299)
chr7 (2-132)||(8585501-8585631)
chr7 (8-132)||(8654693-8654817)
chr7 (1-132)||(17268182-17268313)
chr7 (2-138)||(1301697-1301837)
chr7 (2-132)||(8628775-8628905)
chr7 (12-132)||(8636148-8636268)
chr7 (1-132)||(8647120-8647251)
chr7 (2-132)||(17260484-17260614)
chr7 (2-132)||(6789755-6789885)
chr7 (1-132)||(3147515-3147646)
chr7 (1-132)||(8602217-8602348)
chr7 (1-85)||(8640341-8640425)
chr7 (14-133)||(8610159-8610278)
chr7 (23-129)||(8538282-8538388)
chr7 (1-132)||(7877527-7877658)
chr7 (17-132)||(27830685-27830800)
chr7 (1-126)||(8017207-8017332)
chr7 (1-138)||(39985883-39986020)
chr7 (17-132)||(29577479-29577594)
chr7 (1-79)||(8590934-8591012)
chr7 (8-132)||(8382677-8382801)
chr7 (12-136)||(29581646-29581770)
chr7 (15-132)||(8576569-8576686)
chr7 (12-132)||(8570554-8570674)
chr7 (1-126)||(8102916-8103041)
chr7 (12-132)||(8581943-8582063)
chr7 (1-132)||(8559576-8559707)
[»] chr4 (5 HSPs)
chr4 (1-132)||(9335685-9335816)
chr4 (14-132)||(30775495-30775613)
chr4 (1-132)||(35132691-35132822)
chr4 (1-138)||(23587527-23587664)
chr4 (1-133)||(54396665-54396797)
[»] chr1 (3 HSPs)
chr1 (8-138)||(4678359-4678489)
chr1 (17-132)||(34466603-34466718)
chr1 (2-87)||(15595329-15595414)
[»] chr8 (2 HSPs)
chr8 (1-133)||(43745091-43745221)
chr8 (12-132)||(12528747-12528867)
[»] chr5 (1 HSPs)
chr5 (1-132)||(28220194-28220325)
[»] chr6 (4 HSPs)
chr6 (58-138)||(11200125-11200205)
chr6 (29-132)||(28910825-28910928)
chr6 (58-132)||(11170813-11170887)
chr6 (58-132)||(11209635-11209709)


Alignment Details
Target: chr2 (Bit Score: 126; Significance: 2e-65; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 2e-65
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 16657311 - 16657448
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  16657311 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccatcgctggccttaatgtcattcgaattatc 16657410  T
Q  101 aatgaacctactgctgcagctattgcatatggtattga 138  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  16657411 aatgaacctactgctgcagctattgcatatggtcttga 16657448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 43625786 - 43625670
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| ||||| |||||  ||||||||||| || ||| | |||    
T  43625786 gaatgcagttgttaccgtgcctgcttacttcaatgattctcagcgaaaagccaccatagatgttggtgtcattgtcggccttaatgttttacgagtaatc 43625687  T
Q  101 aatgaacctactgctgc 117  Q
    |||||||| || |||||    
T  43625686 aatgaaccaacagctgc 43625670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 16661787 - 16661917
Alignment:
Q  2 aatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatca 101  Q
    ||||| ||||| ||||| || ||||| || || ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||  |  | || ||||    
T  16661787 aatgcagttgtcactgttcctgcttattttaacgattctcagcgaaaagccaccatggatgctggtgccattgctggccttaacgttgtgaggataatca 16661886  T
Q  102 atgaacctactgctgcagctattgcatatgg 132  Q
    ||||||| ||||| |||||||||||||||||    
T  16661887 atgaacccactgcagcagctattgcatatgg 16661917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 7542600 - 7542469
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||| ||||||||||| || ||||| || |||||||| || ||||||||||| |||||||| ||||||||||||||||| |||||  |  |    ||     
T  7542600 gaatgcagttgttactgtacctgcttattttaatgattctcaacgaaaagccactatagatgcgggtgccattgctggcctcaatgttatgagggcaatg 7542501  T
Q  101 aatgaacctactgctgcagctattgcatatgg 132  Q
    |||||||||||||| |||||| ||||||||||    
T  7542500 aatgaacctactgccgcagctgttgcatatgg 7542469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 12235063 - 12234977
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgt 87  Q
    |||||| |||||||| ||||| ||||| ||||||||||| || |||||||| || ||||||||||||| |||||||||||| |||||    
T  12235063 gaatgcagttgttaccgtgcctgcttatttcaatgattctcaacgaaaagcaactatagatgctggtgtcattgctggcctcaatgt 12234977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 11999768 - 11999637
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    ||||| |||||||||||| |||||||| || | |||||| || ||||||||||| |||||||| ||||| ||||||||| | |||||  |  |  | ||     
T  11999768 gaatgttgttgttactgtaccagcttattttagtgattctcaacgaaaagccactatagatgccggtgcaattgctggcatcaatgttataagggtaatg 11999669  T
Q  101 aatgaacctactgctgcagctattgcatatgg 132  Q
    |||||||| ||||||||| || ||||||||||    
T  11999668 aatgaacccactgctgcaactgttgcatatgg 11999637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 12245200 - 12245331
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||||||||||||||| || ||||| || | |||||| ||||||||||| || |||||||||||  | |||||||| || |||||  |  |  | ||     
T  12245200 gaatgctgttgttactgtacctgcttattttagtgattctcagcgaaaagcaacgatagatgctggctcaattgctggtctcaatgttatgagggtaatg 12245299  T
Q  101 aatgaacctactgctgcagctattgcatatgg 132  Q
    |||||||| |||||||||||| ||||||||||    
T  12245300 aatgaacccactgctgcagctgttgcatatgg 12245331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 14703782 - 14703651
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||| |||||||| ||||| ||||| || | |||||| ||  |||||||||| || ||||||||||  ||||| ||||| |||||  |  |  | ||     
T  14703782 gaatgcagttgttacggtgcctgcttattttagtgattctcaaagaaaagccactatggatgctggtgttattgccggcctcaatgttatgagggtaatg 14703683  T
Q  101 aatgaacctactgctgcagctattgcatatgg 132  Q
    ||||||||||| ||||||||||||||||||||    
T  14703682 aatgaacctacagctgcagctattgcatatgg 14703651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 17716487 - 17716624
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||| ||||||||||| || |||||||| |||  ||| ||| || |||| || |   |||||||||| |||||||| |||||| || |  |||||||     
T  17716487 gaatgccgttgttactgtccctgcttactttaatttttctcagagacaagctactaagcatgctggtgctattgctggtcttaatttcatgagaattatt 17716586  T
Q  101 aatgaacctactgctgcagctattgcatatggtattga 138  Q
    ||||| || ||||||||||| ||||| |||||| ||||    
T  17716587 aatgagcccactgctgcagccattgcttatggttttga 17716624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 132
Target Start/End: Original strand, 12258475 - 12258506
Alignment:
Q  101 aatgaacctactgctgcagctattgcatatgg 132  Q
    ||||||||||||||||||||| ||||||||||    
T  12258475 aatgaacctactgctgcagcttttgcatatgg 12258506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 7e-50; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 7e-50
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 13333250 - 13333381
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| || ||||||| |||    
T  13333250 gaatgccgttgttactgtgccggcttacttcaatgattctcagcgaaaggccaccatagatgctggtgctattgctggccttaatatcattcgaataatc 13333349  T
Q  101 aatgaacctactgctgcagctattgcatatgg 132  Q
    ||||||||||||||||||||||||||||||||    
T  13333350 aatgaacctactgctgcagctattgcatatgg 13333381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 4e-45
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 8667793 - 8667662
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | |||||||| ||||||||| |||| || |||    
T  8667793 gaatgccgttgttactgtgccagcttacttcaatgattctcagcgaaaggccaccatagatgctggtactattgctggacttaatgtcattcggataatc 8667694  T
Q  101 aatgaacctactgctgcagctattgcatatgg 132  Q
    |||||||||||||| |||||||||||||||||    
T  8667693 aatgaacctactgcggcagctattgcatatgg 8667662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 8659737 - 8659600
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    ||||||||||||||| ||||| || || ||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| |||  || ||     
T  8659737 gaatgctgttgttacagtgcctgcatagttcaatgattctcagcgaaaagccaccatagattccggtgccattgctggccttaatgtcattcagataatt 8659638  T
Q  101 aatgaacctactgctgcagctattgcatatggtattga 138  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  8659637 aatgaacctactgctgcagctattgcatatggttttga 8659600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 8671424 - 8671555
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||| |||||||| ||||||||||||||||||||||| |||||||  |||||||| ||||||||| | |||||||| ||||||||| |||| || |||    
T  8671424 gaatgccgttgttaccgtgccagcttacttcaatgattctcagcgaacggccaccattgatgctggtactattgctggacttaatgtcattcggataatc 8671523  T
Q  101 aatgaacctactgctgcagctattgcatatgg 132  Q
    ||||||||||||||||||||||||||||||||    
T  8671524 aatgaacctactgctgcagctattgcatatgg 8671555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 10494168 - 10494299
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    ||||||||||||||||||||| ||||||||||| ||||| || ||||| || || || ||||||||||| |||||||||||||||||| |||| || |||    
T  10494168 gaatgctgttgttactgtgccggcttacttcaacgattctcaacgaaaggctactattgatgctggtgctattgctggccttaatgtcattcggataatc 10494267  T
Q  101 aatgaacctactgctgcagctattgcatatgg 132  Q
    ||||||||||||||||||||||||||||||||    
T  10494268 aatgaacctactgctgcagctattgcatatgg 10494299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 8585501 - 8585631
Alignment:
Q  2 aatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatca 101  Q
    ||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||  |  | || ||||    
T  8585501 aatgcagttgtgactgtgcctgcttatttcaatgattctcagcgaaaagccaccatggatgctggtgccattgctggccttaatgttatgaggataatca 8585600  T
Q  102 atgaacctactgctgcagctattgcatatgg 132  Q
    ||||||| |||||||||||||||||||||||    
T  8585601 atgaacccactgctgcagctattgcatatgg 8585631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 8654817 - 8654693
Alignment:
Q  8 gttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatcaatgaac 107  Q
    |||||||||||||| || ||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||| ||| |||| ||  |||||||||    
T  8654817 gttgttactgtgccggcatacttcaatgactctcagcgaaaagcaaccatagatgctggtgccattgctggacttaacgtcattcggatactcaatgaac 8654718  T
Q  108 ctactgctgcagctattgcatatgg 132  Q
    ||||||| |||||||||||||||||    
T  8654717 ctactgccgcagctattgcatatgg 8654693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 17268313 - 17268182
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||||||  ||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||     | |||    
T  17268313 gaatgctgtcattactgtcccggcttacttcaacgattctcagcgaaaagccaccatagatgctggtgtcattgctggccttaatgtattgaaggtaatc 17268214  T
Q  101 aatgaacctactgctgcagctattgcatatgg 132  Q
    |||||||| |||||||||||||||||||||||    
T  17268213 aatgaaccaactgctgcagctattgcatatgg 17268182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 9e-31
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 1301837 - 1301697
Alignment:
Q  2 aatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatca 101  Q
    |||||||||||||||||||| ||  | ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| |||  || || |    
T  1301837 aatgctgttgttactgtgcctgcacatttcaatgattctcagcgaaaagccaccatagatgccggtgcaattgctggccttaatgtcattcagataatta 1301738  T
Q  102 atgaac----ctactgctgcagctattgcatatggtattga 138  Q
    ||||||    ||||||||||||||||||| |||||| ||||    
T  1301737 atgaacctagctactgctgcagctattgcgtatggttttga 1301697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 2 - 132
Target Start/End: Complemental strand, 8628905 - 8628775
Alignment:
Q  2 aatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatca 101  Q
    ||||| ||||| || ||||| ||||| ||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||  |  | || ||||    
T  8628905 aatgcagttgtcaccgtgcctgcttatttcaatgattctcagcgaaaagccaccatgaatgctggtgccattgctggccttaatgttatgaggataatca 8628806  T
Q  102 atgaacctactgctgcagctattgcatatgg 132  Q
    |||| || |||||||||||||||||||||||    
T  8628805 atgaccccactgctgcagctattgcatatgg 8628775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 8636148 - 8636268
Alignment:
Q  12 ttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatcaatgaacctac 111  Q
    |||||||||| ||||| ||||||||||| ||||| ||| |||||| |||||||||||||||||| |||||||||||  |||| || ||||||||||| ||    
T  8636148 ttactgtgcccgcttatttcaatgattctcagcgtaaatccaccaaagatgctggtgccattgccggccttaatgtaattcggataatcaatgaaccaac 8636247  T
Q  112 tgctgcagctattgcatatgg 132  Q
    |||||||||| |||| |||||    
T  8636248 tgctgcagcttttgcgtatgg 8636268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 8647251 - 8647120
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||| |||||||||||||| || |||||||||||||  |||||||||||||| |||||||| || |||||||||||||||||| || | || || |||    
T  8647251 gaatgcagttgttactgtgcctgcatacttcaatgattatcagcgaaaagccactatagatgccggggccattgctggccttaatatcatccggataatc 8647152  T
Q  101 aatgaacctactgctgcagctattgcatatgg 132  Q
    |||||||| || ||||| ||| | ||||||||    
T  8647151 aatgaaccaacagctgctgctctcgcatatgg 8647120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 2 - 132
Target Start/End: Complemental strand, 17260614 - 17260484
Alignment:
Q  2 aatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaatt-atc 100  Q
    |||| |||| ||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||  |||||||||||| |||| |||  | || ||     
T  17260614 aatgttgttattactgttcctgcttatttcaatgattctcagcgaaaagccaccatagatgctggtgttattgctggcctttatgt-tttgaagttaatt 17260516  T
Q  101 aatgaacctactgctgcagctattgcatatgg 132  Q
    |||||||||| |||||||||||||||||||||    
T  17260515 aatgaacctattgctgcagctattgcatatgg 17260484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 2 - 132
Target Start/End: Complemental strand, 6789885 - 6789755
Alignment:
Q  2 aatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatca 101  Q
    ||||| ||| |||||||||| ||||| ||||||||||| || || ||||||||  |||||||||||||||||||||| ||||||||  | ||||| ||||    
T  6789885 aatgcagttattactgtgcctgcttatttcaatgattctcaacggaaagccactttagatgctggtgccattgctggtcttaatgttatacgaataatca 6789786  T
Q  102 atgaacctactgctgcagctattgcatatgg 132  Q
    ||||||| || ||||| ||| ||||||||||    
T  6789785 atgaaccaacagctgctgctcttgcatatgg 6789755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 3147646 - 3147515
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||| |||||||| || || ||||| ||||||||| | ||||| ||||| || |||||||||||||  ||||||||||||||| |  | || || |||    
T  3147646 gaatgcagttgttaccgtacctgcttatttcaatgatgctcagcggaaagcgacaatagatgctggtgttattgctggccttaatattatgcggataatc 3147547  T
Q  101 aatgaacctactgctgcagctattgcatatgg 132  Q
    |||||||||||||||||||||||||| |||||    
T  3147546 aatgaacctactgctgcagctattgcgtatgg 3147515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 8602348 - 8602217
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||| |||||||||||||| ||||| || |||||||| |||||||||||||| | ||||||||||||||||||||| || |||||  | || || |||    
T  8602348 gaatgcagttgttactgtgccggcttattttaatgattctcagcgaaaagccacaaaagatgctggtgccattgctggtctcaatgtaatgcggataatc 8602249  T
Q  101 aatgaacctactgctgcagctattgcatatgg 132  Q
    ||||| || ||||| || ||| ||||||||||    
T  8602248 aatgagccaactgcagctgctcttgcatatgg 8602217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 8640341 - 8640425
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaat 85  Q
    |||||| ||||||||| |||| ||||||||||||||||  |||| |||||||||||||||||| || ||||||||||||||||||    
T  8640341 gaatgcagttgttactatgcctgcttacttcaatgattatcagcaaaaagccaccatagatgccggggccattgctggccttaat 8640425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 8610278 - 8610159
Alignment:
Q  14 actgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatcaatgaacctactg 113  Q
    |||||||| ||||| || |||||||| ||||| |||||||| | ||||||||||| |||| |||||||||||||  | || |||||||||||||| || |    
T  8610278 actgtgcctgcttattttaatgattctcagcggaaagccacaaaagatgctggtgtcatttctggccttaatgtaatccggattatcaatgaaccaacgg 8610179  T
Q  114 ctgcagctattgcatatggt 133  Q
    |||| ||| |||||||||||    
T  8610178 ctgcggctcttgcatatggt 8610159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 8538388 - 8538282
Alignment:
Q  23 gcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatcaatgaacctactgctgcagcta 122  Q
    ||||| ||||||||||| ||||||| |||||||| ||||||||||| |||||||||||| |||||  | || || |||||||||||||| ||||| |||     
T  8538388 gcttatttcaatgattcacagcgaagagccaccaaagatgctggtgtcattgctggcctcaatgtaatgcggataatcaatgaacctacagctgctgctc 8538289  T
Q  123 ttgcata 129  Q
    |||||||    
T  8538288 ttgcata 8538282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 7877527 - 7877658
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||| |||||||||||||| ||||| ||||||||||| || ||||||||||| | ||||||||||||  |||| ||||| |||||  | || || ||     
T  7877527 gaatgcagttgttactgtgccggcttatttcaatgattctcaacgaaaagccacaaaagatgctggtgcagttgccggcctcaatgttatgcggataatt 7877626  T
Q  101 aatgaacctactgctgcagctattgcatatgg 132  Q
    |||||||| |||||||| ||  ||||||||||    
T  7877627 aatgaaccaactgctgctgcccttgcatatgg 7877658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 27830685 - 27830800
Alignment:
Q  17 gtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatcaatgaacctactgctg 116  Q
    ||||||||||| |||||||| || || |||||||||||  ||||| | |||||||||||||||||||||||  | || || || |  || ||||||||||    
T  27830685 gtgccagcttatttcaatgactctcaacgaaaagccactgtagattccggtgccattgctggccttaatgttatgcggataataagcgagcctactgctg 27830784  T
Q  117 cagctattgcatatgg 132  Q
    ||||||||||||||||    
T  27830785 cagctattgcatatgg 27830800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 8017207 - 8017332
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||| |||||||| || ||||||||||||||||||||||||||  ||||||| |  ||||| |||| |||||| || || ||||| ||  ||||||||    
T  8017207 gaatgccgttgttacagttccagcttacttcaatgattcgcagcgtcaagccacaaaggatgccggtgtcattgcaggactcaatgttttgagaattatc 8017306  T
Q  101 aatgaacctactgctgcagctattgc 126  Q
    || || || || ||||||||||||||    
T  8017307 aacgagccaacagctgcagctattgc 8017332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 39986020 - 39985883
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||||||||||||||| || |||||||| ||||| || |||||  |||| ||||  |||||||| |  ||||| || ||||||||| | |||||||||    
T  39986020 gaatgctgttgttactgtccctgcttactttaatgactcccagcgtcaagctaccaaggatgctggagttattgccggtcttaatgtcatgcgaattatc 39985921  T
Q  101 aatgaacctactgctgcagctattgcatatggtattga 138  Q
    ||||| || |||||||| || ||||| |||||| ||||    
T  39985920 aatgagcccactgctgctgccattgcttatggtcttga 39985883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 29577479 - 29577594
Alignment:
Q  17 gtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatcaatgaacctactgctg 116  Q
    ||||||||||| ||||||||||| |||||||||||||||| |||||| ||    ||||||||||| |||||  | || || ||||||||||| |||||||    
T  29577479 gtgccagcttatttcaatgattctcagcgaaaagccaccaaagatgccggcattattgctggcctcaatgtaatgcggataatcaatgaaccaactgctg 29577578  T
Q  117 cagctattgcatatgg 132  Q
    | ||  ||||||||||    
T  29577579 ctgcacttgcatatgg 29577594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 8591012 - 8590934
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggc 79  Q
    |||||| |||||||||||||||||||| || |||||||| ||| | ||||| |||| ||||||||||| ||||||||||    
T  8591012 gaatgcagttgttactgtgccagcttattttaatgattctcagaggaaagctaccaaagatgctggtgtcattgctggc 8590934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 8382677 - 8382801
Alignment:
Q  8 gttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatcaatgaac 107  Q
    |||||||| ||||| || || ||||||||||| || || |||||||| | |||||||||||| ||||||||||| |||||  | || || |||||||| |    
T  8382677 gttgttaccgtgcctgcatatttcaatgattctcaacggaaagccacaaaagatgctggtgcgattgctggcctcaatgtaatgcggataatcaatgagc 8382776  T
Q  108 ctactgctgcagctattgcatatgg 132  Q
    | ||||| || ||| ||||||||||    
T  8382777 caactgccgctgctcttgcatatgg 8382801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 136
Target Start/End: Original strand, 29581646 - 29581770
Alignment:
Q  12 ttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatcaatgaacctac 111  Q
    |||| ||||| ||||| ||||||||||| |||||||||||||||| |||||||||    || |||||||| |||||  |  | || ||||| ||||| ||    
T  29581646 ttaccgtgcctgcttatttcaatgattctcagcgaaaagccaccaaagatgctggcattatagctggcctcaatgtaatgaggataatcaacgaaccaac 29581745  T
Q  112 tgctgcagctattgcatatggtatt 136  Q
    |||||| ||  ||||||||||||||    
T  29581746 tgctgctgcacttgcatatggtatt 29581770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 8576686 - 8576569
Alignment:
Q  15 ctgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatcaatgaacctactgc 114  Q
    ||||||| ||||| || |||||||| || |||| |||||| | |||||| ||||| |||||||| || |||||| | |  || ||||||||||| |||||    
T  8576686 ctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgc 8576587  T
Q  115 tgcagctattgcatatgg 132  Q
     |||||| |||| |||||    
T  8576586 ggcagctcttgcgtatgg 8576569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 8570674 - 8570554
Alignment:
Q  12 ttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatcaatgaacctac 111  Q
    ||||||| || ||||| || |||||||| || |||| |||||| | |||||| ||||  |||||||| || |||||  | || || ||||||||||| ||    
T  8570674 ttactgtacctgcttattttaatgattcacaacgaagagccactaaagatgcaggtgaaattgctggtctcaatgtaatgcggataatcaatgaaccgac 8570575  T
Q  112 tgctgcagctattgcatatgg 132  Q
    ||| |||||| ||||||||||    
T  8570574 tgcggcagctcttgcatatgg 8570554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 8103041 - 8102916
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||| || || ||||| || ||||||||||||||||| |||||  |||| || | |||||||||||  || |||||  | ||||| ||  |||||||     
T  8103041 gaatgccgtcgtcactgtccctgcttacttcaatgattctcagcgtcaagcaactaaagatgctggtgttatcgctggtttaaatgttttgagaattatt 8102942  T
Q  101 aatgaacctactgctgcagctattgc 126  Q
    ||||| || |||||||| ||||||||    
T  8102941 aatgagccaactgctgctgctattgc 8102916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 8582063 - 8581943
Alignment:
Q  12 ttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatcaatgaacctac 111  Q
    ||||||| || ||||| || |||||||| || |||| |||||| | |||||| ||||  ||||| || || |||||  | || || ||||||||||| ||    
T  8582063 ttactgtacctgcttattttaatgattcacaacgaagagccactaaagatgcaggtgaaattgcaggtctcaatgtaatgcggataatcaatgaaccgac 8581964  T
Q  112 tgctgcagctattgcatatgg 132  Q
    ||| |||||| ||||||||||    
T  8581963 tgcggcagctcttgcatatgg 8581943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 8559707 - 8559576
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||||||  |||| || || ||||| || |||||||| ||  ||| |||||||| |||||| ||||  |||||||| ||||||||  | |  || |||    
T  8559707 gaatgctgtgattaccgtacctgcttattttaatgattctcaaagaagagccaccaaagatgcaggtgaaattgctggtcttaatgtaatgcagataatc 8559608  T
Q  101 aatgaacctactgctgcagctattgcatatgg 132  Q
    |||||||| ||||| || ||| ||||||||||    
T  8559607 aatgaaccaactgcagctgctcttgcatatgg 8559576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 2e-47; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 9335685 - 9335816
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| | |||||||||||||||||| |||| || |||    
T  9335685 gaatgccgttgttaccgtgccagcttacttcaatgattctcagcgaaaggccaccatagatgctggtactattgctggccttaatgtcattcggataatc 9335784  T
Q  101 aatgaacctactgctgcagctattgcatatgg 132  Q
    ||||||||||||||||||||||||||||||||    
T  9335785 aatgaacctactgctgcagctattgcatatgg 9335816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 30775613 - 30775495
Alignment:
Q  14 actgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatcaatgaacctactg 113  Q
    |||||||| ||||| ||||||||| | |||||||||||||| || |||||||||||||||||||| ||||||||  |  |||| || ||||| || ||||    
T  30775613 actgtgcctgcttatttcaatgatgcacagcgaaaagccactatggatgctggtgccattgctggtcttaatgttatgagaataattaatgagcccactg 30775514  T
Q  114 ctgcagctattgcatatgg 132  Q
    | |||||||||||||||||    
T  30775513 cagcagctattgcatatgg 30775495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 35132822 - 35132691
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||| |||||||||||||| ||||| || | |||||| || ||||||||||| |||||||||||||| |||||||| |  |||||  |  || | ||     
T  35132822 gaatgcagttgttactgtgcctgcttattttagtgattctcaacgaaaagccactatagatgctggtgctattgctggtcccaatgttatgagagtaatg 35132723  T
Q  101 aatgaacctactgctgcagctattgcatatgg 132  Q
    |||||||||||||| |||||  ||||||||||    
T  35132722 aatgaacctactgccgcagcggttgcatatgg 35132691  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 23587527 - 23587664
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||| ||||| |||||||| ||||||||||| ||||| || ||  |||| || | |||||| |||| |||| |||| || ||||| ||  |||||||     
T  23587527 gaatgccgttgtaactgtgcctgcttacttcaacgattcacaacgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaattatt 23587626  T
Q  101 aatgaacctactgctgcagctattgcatatggtattga 138  Q
    ||||||||||| ||||| |||||||| |||||| ||||    
T  23587627 aatgaacctaccgctgctgctattgcttatggtcttga 23587664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 54396797 - 54396665
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||||||||||||||| || ||||| ||||||||||| || ||  |||| || | |||||||||||| ||| | ||  | ||||| ||  | |||||     
T  54396797 gaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggattatt 54396698  T
Q  101 aatgaacctactgctgcagctattgcatatggt 133  Q
    ||||| ||||||||||| || ||||| ||||||    
T  54396697 aatgagcctactgctgctgcaattgcttatggt 54396665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 1e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 4678359 - 4678489
Alignment:
Q  8 gttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatcaatgaac 107  Q
    |||||||||||||| || |||||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||||| ||| ||| ||||| ||||    
T  4678359 gttgttactgtgcctgcatacttcaatgattctcaacgaaaagctaccatagatgctggtgccattgctggacttaatgtcattcaaataatcaacgaac 4678458  T
Q  108 ctactgctgcagctattgcatatggtattga 138  Q
    |||||| ||||||||||||||||||| ||||    
T  4678459 ctactgttgcagctattgcatatggttttga 4678489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 34466603 - 34466718
Alignment:
Q  17 gtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatcaatgaacctactgctg 116  Q
    ||||| ||||| || |||||||| ||||||||||| ||  | ||||||||| | ||||||||||||||||| || | ||| ||||||||||| |||||||    
T  34466603 gtgcctgcttattttaatgattctcagcgaaaagctactgtggatgctggtactattgctggccttaatgttttgcaaataatcaatgaacccactgctg 34466702  T
Q  117 cagctattgcatatgg 132  Q
    ||||||||||||||||    
T  34466703 cagctattgcatatgg 34466718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 15595414 - 15595329
Alignment:
Q  2 aatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgt 87  Q
    ||||| |||||||| ||||| |||||  |||||||||| || ||||||||||| |||||||| |||||||||||||||||||||||    
T  15595414 aatgcagttgttaccgtgcctgcttatctcaatgattctcaacgaaaagccactatagatgcaggtgccattgctggccttaatgt 15595329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 9e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 43745221 - 43745091
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||| |||||||||||||| ||||| ||||||||||  ||||| ||||||||  |||||||||||||||||||||| ||| ||||  |    || |||    
T  43745221 gaatgcagttgttactgtgccggcttatttcaatgattatcagcggaaagccac--tagatgctggtgccattgctgggcttgatgttatgaagataatc 43745124  T
Q  101 aatgaacctactgctgcagctattgcatatggt 133  Q
    |||||||| ||||||||||||||||||||||||    
T  43745123 aatgaacccactgctgcagctattgcatatggt 43745091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 12528867 - 12528747
Alignment:
Q  12 ttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatcaatgaacctac 111  Q
    |||| |||||||| || ||||||||||||||||||  ||||||||  |||||||||| |||||||||||| |||||  | || || ||||| ||||| ||    
T  12528867 ttacggtgccagcgtatttcaatgattcgcagcgacgagccaccaaggatgctggtgtcattgctggcctcaatgtaatacggataatcaacgaaccaac 12528768  T
Q  112 tgctgcagctattgcatatgg 132  Q
    ||| || ||| ||||||||||    
T  12528767 tgcagctgctcttgcatatgg 12528747  T

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Target: chr5 (Bit Score: 52; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 28220325 - 28220194
Alignment:
Q  1 gaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatc 100  Q
    |||||| ||| |||||||||| ||||| ||||||||||  ||||| ||||||||||||||||| ||| |||||||||| || |||||  |  | ||  ||    
T  28220325 gaatgcagttattactgtgcctgcttatttcaatgattatcagcggaaagccaccatagatgcaggtaccattgctggtctaaatgttctaaggatagtc 28220226  T
Q  101 aatgaacctactgctgcagctattgcatatgg 132  Q
    |||||||| |||||||| ||||||||||||||    
T  28220225 aatgaacccactgctgctgctattgcatatgg 28220194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.0000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 11200205 - 11200125
Alignment:
Q  58 agatgctggtgccattgctggccttaatgtctttcgaattatcaatgaacctactgctgcagctattgcatatggtattga 138  Q
    |||||| ||||| ||||||||||| ||||| || ||||| |||||||| ||| |||| || || |||||||||||| ||||    
T  11200205 agatgcgggtgctattgctggcctcaatgttttgcgaataatcaatgagccttctgcagctgcaattgcatatggtcttga 11200125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 28910928 - 28910825
Alignment:
Q  29 ttcaatgattcgcagcgaaaagccaccatagatgctggtgccattgctggccttaatgtctttcgaattatcaatgaacctactgctgcagctattgcat 128  Q
    |||||||||||  || | ||||||||||||||||||||||||||||   | ||||||||  | || || |||||||| |  ||||||| ||||||| |||    
T  28910928 ttcaatgattcttagaggaaagccaccatagatgctggtgccattgtcaggcttaatgttatgcggataatcaatgagctcactgctgtagctatttcat 28910829  T
Q  129 atgg 132  Q
    ||||    
T  28910828 atgg 28910825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 11170887 - 11170813
Alignment:
Q  58 agatgctggtgccattgctggccttaatgtctttcgaattatcaatgaacctactgctgcagctattgcatatgg 132  Q
    |||||| ||||| ||||||||||| ||||| || |||||  ||||||| |||||||| || || |||||||||||    
T  11170887 agatgcgggtgctattgctggcctcaatgttttgcgaatactcaatgagcctactgcagctgcaattgcatatgg 11170813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 11209709 - 11209635
Alignment:
Q  58 agatgctggtgccattgctggccttaatgtctttcgaattatcaatgaacctactgctgcagctattgcatatgg 132  Q
    |||||| ||||| ||||||||||| ||||| || |||||  ||||||| |||||||| || || |||||||||||    
T  11209709 agatgcgggtgctattgctggcctcaatgttttgcgaatactcaatgagcctactgcagctgcaattgcatatgg 11209635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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