View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5853-21 (Length: 138)
Name: Solexa-NF5853-21
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5853-21 |
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| [»] chr8 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 2e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 2e-65
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 27536774 - 27536911
Alignment:
| Q |
1 |
agagagaaagcttaagctaataatagaaggttgttacagggctatagagcaaaagacagataaggctaaaacatatttacaacttacaaatccaaaatta |
100 |
Q |
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| T |
27536774 |
agagagaaaactgaagctaataatagaaggttgttacagggctatagagcaaaagacagataaggctaaaacatatttacaacttacgaatccaaaatta |
27536873 |
T |
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| Q |
101 |
ttaacataaagatagaatagcagtaactatattgtgag |
138 |
Q |
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| T |
27536874 |
ttaacataaagatagaatagcagtaactatattgtgag |
27536911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 15643303 - 15643438
Alignment:
| Q |
1 |
agagagaaagcttaagctaataatagaaggttgttacagggctatagagcaaaagacagataaggctaaaacatatttacaacttacaaatccaaaatta |
100 |
Q |
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||||||||| || |||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15643303 |
agagagaaaactgaagctaataatagaagattgttatagg-ctatagagcaaaagacagataaggctaaaacatatttacaacttacgaatccaaaatta |
15643401 |
T |
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| Q |
101 |
ttaacataaagatagaatagcagtaactatattgtgag |
138 |
Q |
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| T |
15643402 |
ttgacataaa-atagaatcgcagtaactatattgtgag |
15643438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 15654609 - 15654745
Alignment:
| Q |
1 |
agagagaaagcttaagctaataatagaaggttgttacagggctatagagcaaaagacagataaggctaaaacatatttacaacttacaaatccaaaatta |
100 |
Q |
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| T |
15654609 |
agagacaaaactgaagctaaaaatagaaggttgttacatggttatagacgaaaagacagataaggctaaaacatatttacaacttaagaatccaaaatta |
15654708 |
T |
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| Q |
101 |
ttaacataaagatagaatagcagtaactatattgtgag |
138 |
Q |
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| T |
15654709 |
ttaacataaa-atagaatagcagtaactatattgtgag |
15654745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 3e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 4303339 - 4303445
Alignment:
| Q |
32 |
tgttacagggctatagagcaaaagacagataaggctaaaacatatttacaacttacaaatccaaaattattaacataaagatagaatagcagtaactata |
131 |
Q |
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| T |
4303339 |
tgttacagggctatagaggaaaagacagataaggctaaaacagatttacaacttacgaatccaaaattactaacagaaagatagaatagcagcaactatg |
4303438 |
T |
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| Q |
132 |
ttgtgag |
138 |
Q |
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||||||| |
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| T |
4303439 |
ttgtgag |
4303445 |
T |
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