View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5853-24 (Length: 130)

Name: Solexa-NF5853-24
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5853-24
Solexa-NF5853-24
[»] chr1 (3 HSPs)
chr1 (62-130)||(45924537-45924605)
chr1 (62-130)||(45936485-45936553)
chr1 (15-58)||(23225697-23225740)
[»] chr2 (1 HSPs)
chr2 (14-58)||(37049433-37049477)
[»] chr7 (1 HSPs)
chr7 (18-60)||(2306919-2306961)


Alignment Details
Target: chr1 (Bit Score: 53; Significance: 8e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 45924605 - 45924537
Alignment:
Q  62 aacttactagataattaattgagcatataatatacactctctatctaggtcttcaacaatttcctagta 130  Q
    |||||||||||| ||||||||||| |||||||||  |||||||||||||||||||||||||||||||||    
T  45924605 aacttactagatgattaattgagcttataatatatgctctctatctaggtcttcaacaatttcctagta 45924537  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 45936553 - 45936485
Alignment:
Q  62 aacttactagataattaattgagcatataatatacactctctatctaggtcttcaacaatttcctagta 130  Q
    |||||||||||| ||||||||||| |||||||||  |||||||||||||||||||||||||||||||||    
T  45936553 aacttactagatgattaattgagcttataatatatgctctctatctaggtcttcaacaatttcctagta 45936485  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 23225697 - 23225740
Alignment:
Q  15 caaatgcccagacaatcaagagggcaagctagccaactatggac 58  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  23225697 caaatgcccagacaaacaagagggcaagctagccaactatggac 23225740  T

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Target: chr2 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 37049477 - 37049433
Alignment:
Q  14 tcaaatgcccagacaatcaagagggcaagctagccaactatggac 58  Q
    ||||||||||||||||||||  |||||||||||||||| ||||||    
T  37049477 tcaaatgcccagacaatcaaaggggcaagctagccaaccatggac 37049433  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 2306919 - 2306961
Alignment:
Q  18 atgcccagacaatcaagagggcaagctagccaactatggacac 60  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||    
T  2306919 atgcccagataatcaagagggcaagcaagccaactatgaacac 2306961  T

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