View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5853-26 (Length: 127)
Name: Solexa-NF5853-26
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5853-26 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 85; Significance: 6e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 6e-41
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 9787583 - 9787457
Alignment:
| Q |
8 |
atatcacgtagagatgactactcttcatatatcaattttgggcgaactatgaagaaatcatggatcaaactctt-------caccgttgccttgcgtaga |
100 |
Q |
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| T |
9787583 |
atatcacgtagagatggctactcttcacatatcaattttgggcgaactatgaagaaatcatggatcaaactcttcactatgcaccgctgccttgcgtaga |
9787484 |
T |
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| Q |
101 |
gcgtcctatcggaatggggaccaaggg |
127 |
Q |
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| T |
9787483 |
gcgtcctatcggagtggggaccaaggg |
9787457 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 51874795 - 51874721
Alignment:
| Q |
8 |
atatcacgtagagatgactactcttcatatatcaattttgggcgaacta----tgaagaaatcatggatcaaact |
78 |
Q |
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| T |
51874795 |
atatcacgtacaaatgactacttttaatatttcaattttgggtgaactaagtgtgaaggaatcatggatcaaact |
51874721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 34278448 - 34278404
Alignment:
| Q |
83 |
accgttgccttgcgtagagcgtcctatcggaatggggaccaaggg |
127 |
Q |
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| T |
34278448 |
accgttgccttacgttgagcgtcctatcggagtggggacaaaggg |
34278404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 34281995 - 34282039
Alignment:
| Q |
83 |
accgttgccttgcgtagagcgtcctatcggaatggggaccaaggg |
127 |
Q |
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| T |
34281995 |
accgttgccttacgttgagcgtcctatcggagtggggacaaaggg |
34282039 |
T |
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