View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5853-27 (Length: 127)
Name: Solexa-NF5853-27
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5853-27 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 2e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 36722239 - 36722358
Alignment:
| Q |
8 |
agttcttcatccacatattggttatcatcttcttggtagtcttcgccggtttaatgtccggactcaccttaggtctcatgtctctcagtctcgttgatct |
107 |
Q |
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| T |
36722239 |
agttcttcatccacatattggttatcatcttcttggtagtcttcgctggtttaatgtccggactcaccttaggtctcatgtctctcagtctcgttgatct |
36722338 |
T |
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| Q |
108 |
tgaagttcttgctaagtctg |
127 |
Q |
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| T |
36722339 |
tgaagttcttgctaagtctg |
36722358 |
T |
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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 48667365 - 48667422
Alignment:
| Q |
61 |
atgtccggactcaccttaggtctcatgtctctcagtctcgttgatcttgaagttcttg |
118 |
Q |
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| T |
48667365 |
atgtccggtctcactcttggtctcatgtctctcagtctcgtcgaccttgaaattcttg |
48667422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 2425815 - 2425761
Alignment:
| Q |
73 |
accttaggtctcatgtctctcagtctcgttgatcttgaagttcttgctaagtctg |
127 |
Q |
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| T |
2425815 |
accttaggcctcatgtctctgagtcttgttgatcttgaggttcttgctaaatctg |
2425761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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