View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5853-28 (Length: 127)

Name: Solexa-NF5853-28
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5853-28
Solexa-NF5853-28
[»] chr1 (1 HSPs)
chr1 (8-127)||(45936063-45936182)
[»] chr3 (2 HSPs)
chr3 (8-127)||(15818082-15818201)
chr3 (82-127)||(15831266-15831311)
[»] chr4 (2 HSPs)
chr4 (11-127)||(5191949-5192064)
chr4 (11-84)||(5164552-5164626)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 1e-54; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 45936063 - 45936182
Alignment:
Q  8 aaattttcctctattcactgattccatatttttccaatgtaggaaggaaccgaaagttttcagtttgaagagaacatgaaattttgcgaattcagattat 107  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  45936063 aaattttcctctactcactgattccatatttttccaatgtaggaaggaaccgaaagttttcggtttgaagagaacatgaaattttgcgaattctgattat 45936162  T
Q  108 ttcctttccctgttagctca 127  Q
    ||||||||||||||||||||    
T  45936163 ttcctttccctgttagctca 45936182  T

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Target: chr3 (Bit Score: 92; Significance: 4e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 4e-45
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 15818082 - 15818201
Alignment:
Q  8 aaattttcctctattcactgattccatatttttccaatgtaggaaggaaccgaaagttttcagtttgaagagaacatgaaattttgcgaattcagattat 107  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||| |||||     
T  15818082 aaattttcctctactcactgattccctatttttccaatgtaggaaggaaccggaagttttcggtttgaagagaacatgaaattttgggaattctgattac 15818181  T
Q  108 ttcctttccctgttagctca 127  Q
    ||||||||||||||||||||    
T  15818182 ttcctttccctgttagctca 15818201  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 15831266 - 15831311
Alignment:
Q  82 catgaaattttgcgaattcagattatttcctttccctgttagctca 127  Q
    |||||| ||||| |||||| ||||||||||||||||||||||||||    
T  15831266 catgaatttttgggaattctgattatttcctttccctgttagctca 15831311  T

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Target: chr4 (Bit Score: 51; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 5191949 - 5192064
Alignment:
Q  11 ttttcctctattcactgattccatatttt-tccaatgtaggaaggaaccgaaagttttcagtttgaagagaacatgaaattttgcgaattcagattattt 109  Q
    |||||||||  ||||||||||| |||||| ||| |||||||||||  ||||||||||||||||||||||||||| ||| ||||| || ||| |||  |||    
T  5191949 ttttcctctcctcactgattccttattttgtccgatgtaggaaggtcccgaaagttttcagtttgaagagaacaagaatttttgggagttctgat--ttt 5192046  T
Q  110 cctttccctgttagctca 127  Q
    ||||||||| ||||||||    
T  5192047 cctttccctattagctca 5192064  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 5164552 - 5164626
Alignment:
Q  11 ttttcctctattcactgattccatat-ttttccaatgtaggaaggaaccgaaagttttcagtttgaagagaacat 84  Q
    |||||||||  ||||||||||| ||| |||| ||||||||| |||||||||||||||||||||||| ||||||||    
T  5164552 ttttcctctcctcactgattccttatatttttcaatgtaggcaggaaccgaaagttttcagtttgatgagaacat 5164626  T

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