View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5853-3 (Length: 204)
Name: Solexa-NF5853-3
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5853-3 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 42706615 - 42706812
Alignment:
| Q |
7 |
agaaatcttttgtgaattcacagcccttgaagtagatttctctctcctattcttaatcattcgtttgaaacaattatgcttttctttggattctttctat |
106 |
Q |
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| T |
42706615 |
agaaatcttttgtgaattcacagcccttggagtagatttctctctcctattcttaatcattcgtttgaaaaaattatgcttttctttggattctttctat |
42706714 |
T |
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| Q |
107 |
caatttttcatatctggtctctttgtgattgtaacaatcagtgtggctgaagactattctaaaaaagattgaccatttcctgattttcaactgccttt |
204 |
Q |
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| T |
42706715 |
caatttttcatatctggtctctttgtgattgtaacaatcagtgtggctgaagactattctaaaaaagattgaccatttcctgattttcaactgccttt |
42706812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 42712584 - 42712781
Alignment:
| Q |
7 |
agaaatcttttgtgaattcacagcccttgaagtagatttctctctcctattcttaatcattcgtttgaaacaattatgcttttctttggattctttctat |
106 |
Q |
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|||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42712584 |
agaaatcttttgtgaattgacagcccttggagtagatttatctctcctattcttaatcattcgttggaaacaattatgcttttctttggattctttctat |
42712683 |
T |
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| Q |
107 |
caatttttcatatctggtctctttgtgattgtaacaatcagtgtggctgaagactattctaaaaaagattgaccatttcctgattttcaactgccttt |
204 |
Q |
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| T |
42712684 |
caatttttcacatctggtctctttgggattgtaacaatcagtgtggctgaagactattctaaaaaagattggccatttcctgattttcaactaccttt |
42712781 |
T |
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