View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5853-30 (Length: 127)
Name: Solexa-NF5853-30
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5853-30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 85; Significance: 6e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 6e-41
Query Start/End: Original strand, 6 - 126
Target Start/End: Complemental strand, 3859229 - 3859109
Alignment:
| Q |
6 |
caataataacgttacccaatcaattatctaaagctcataattaaatccataactgtaaactnnnnnnnngtccatatagtcactaatgcaaacgcctcta |
105 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| || |
|
|
| T |
3859229 |
caataataacgctacccaatcaattatctaaagctcataattaaatccataactgtaaactaaaaaaaagaccatatagtcactaatgcaaacgcctgta |
3859130 |
T |
|
| Q |
106 |
cccaagtgagaaagaaggttc |
126 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
3859129 |
cccaagtgagaaagaaggttc |
3859109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University