View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5853-38 (Length: 116)
Name: Solexa-NF5853-38
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5853-38 |
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| [»] scaffold0349 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 93; Significance: 9e-46; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 9e-46
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 27703480 - 27703376
Alignment:
| Q |
1 |
agaggaggatatcaatgcttcattgcaacaacaggatttgacgaaagaggaacaaagaaagacatggggtacattccttagtctaggtgcatcaaaaagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27703480 |
agaggaggatatcaatgcttcattgcaacaacaggatttaaagaaagaggaacaaaaaaagacatggggtacattccttagtctaggtgcatcaaaaagc |
27703381 |
T |
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| Q |
101 |
aacac |
105 |
Q |
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||||| |
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| T |
27703380 |
aacac |
27703376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 8e-31
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 27682508 - 27682583
Alignment:
| Q |
1 |
agaggaggatatcaatgcttcattgcaacaacaggatttgacgaaagaggaacaaagaaagacatggggtacattc |
76 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
27682508 |
agaggaggatatcaatgcttcattgcaacaacaggaattgatgaaagaggaacaaagaaagacatggggtacattc |
27682583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 27715147 - 27715092
Alignment:
| Q |
1 |
agaggaggatatcaatgcttcattgcaacaacaggatttgacgaaagaggaacaaa |
56 |
Q |
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| T |
27715147 |
agaggaggatatcaatgcttcattgcaacagcaggatttgacgaaagaggaacaaa |
27715092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 26059489 - 26059543
Alignment:
| Q |
56 |
agaaagacatggggtacattccttagtctaggtgcatcaaaaagcaacactgatg |
110 |
Q |
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| T |
26059489 |
agaaagacttggggtacattccttagtctaggtgcatcaaaaagcaacacggatg |
26059543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 26079459 - 26079513
Alignment:
| Q |
56 |
agaaagacatggggtacattccttagtctaggtgcatcaaaaagcaacactgatg |
110 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26079459 |
agaaagacttggggtacattccttagtctaggtgcatcaaaaagcaacacggatg |
26079513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 27078974 - 27079057
Alignment:
| Q |
8 |
gatatcaatgcttcattgcaacaacaggatttgacgaaagaggaacaaagaaagacatggggtacattccttagtctaggtgcat |
92 |
Q |
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|||||||| ||||| ||||||||| |||| |||| |||| |||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
27078974 |
gatatcaa-gcttcgttgcaacaaaaggaattgataaaagtggaagaaagaaagacatggggtacattcctttgtctaggtgcat |
27079057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 26852258 - 26852297
Alignment:
| Q |
57 |
gaaagacatggggtacattccttagtctaggtgcatcaaa |
96 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |
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| T |
26852258 |
gaaagacttggggtacattccttagtctaggtgcatcaaa |
26852297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 29270451 - 29270364
Alignment:
| Q |
1 |
agaggaggatatcaatgcttcattgcaacaacaggatttgacgaaagaggaacaaagaaagacatggggtacattccttagtctaggt |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29270451 |
agaggaggatatcaatgcttcattgcaacaacaggatttgacgaaagaggaacaaagaaagacatggggtacataccttagtctaggt |
29270364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 52; Significance: 3e-21; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16797 - 16852
Alignment:
| Q |
1 |
agaggaggatatcaatgcttcattgcaacaacaggatttgacgaaagaggaacaaa |
56 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16797 |
agaggaggatatcaatgcttcattgcaacagcaggatttgacgaaagaggaacaaa |
16852 |
T |
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