View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5853-39 (Length: 116)
Name: Solexa-NF5853-39
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5853-39 |
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Alignment Details
Target: chr8 (Bit Score: 71; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 9787194 - 9787284
Alignment:
| Q |
4 |
gtaccattgttgcagccaaaaccaaaatgtgtgaaatgctgatatagcatcttaaagttaccatgaatgaaaatgctatct-aggatgttg |
93 |
Q |
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| T |
9787194 |
gtaccattgttgcagccaaaaccaaaatgtgtgcaatgctgagatagcatcttaaagttaccataaatgaaaatgctatctaaggatgttg |
9787284 |
T |
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Target: chr6 (Bit Score: 58; Significance: 7e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 7e-25
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 30144588 - 30144664
Alignment:
| Q |
5 |
taccattgttgcagccaaaaccaaaatgtgtgaaatgctgatatagcatcttaaagttaccatgaatgaaaatgctat |
82 |
Q |
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| T |
30144588 |
taccattgtttcagccaaaaccaaaatgtgtgaagtgctgatatagcat-ttaaagttaccatgaataaaaatgctat |
30144664 |
T |
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