View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5853-4 (Length: 191)
Name: Solexa-NF5853-4
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5853-4 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 4787058 - 4786873
Alignment:
| Q |
8 |
aaactaactaactacatttcctaaaagaaaaatgccccaaaccaaaagtttgctacagcttgttacaaaagtagatccattgatataattaattaat--- |
104 |
Q |
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| T |
4787058 |
aaactaactaactacatttcctaaaaaaaaaatgccccaaaccaaaagtttgctacagcttgttaccaaagtagatccattgatataattaattaattaa |
4786959 |
T |
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| Q |
105 |
-catcctacaagcttgatacatgcattttgatcagtttctacaaccaaatactagattgtgaactggattaatggacgtgaataaa |
189 |
Q |
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| T |
4786958 |
tcatcctacaagcttgatacatgcattttgatcagtttctacgaccaaatactagattgtgaacttgattaatggacgtgaataaa |
4786873 |
T |
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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 14690294 - 14690435
Alignment:
| Q |
22 |
catttcctaaaagaaaaatgccccaaa-ccaaaagtttgctacagcttgttacaaaagtagatccattgatataattaattaatcatcctacaagcttga |
120 |
Q |
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| T |
14690294 |
catttcctaaatgaaacatgtcacaaaaccaaaagtttgctacagcttgctgccaaagtagatccattgatataattaatt-atcgtccaacaagattgt |
14690392 |
T |
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| Q |
121 |
tacatgcattttgatcagtttctacaaccaaatactagattgtgaa |
166 |
Q |
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| T |
14690393 |
tacaactattttg---aatttctacaatcacatactagattgtgaa |
14690435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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