View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5853-49 (Length: 65)
Name: Solexa-NF5853-49
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5853-49 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 57; Significance: 1e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-24
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 42473466 - 42473522
Alignment:
| Q |
9 |
agacaatagaagagctgctgctgaggtaaaaagggacaatttggagctgcaaacatg |
65 |
Q |
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| T |
42473466 |
agacaatagaagagctgctgctgaggtaaaaagggacaatttggagctgcaaacatg |
42473522 |
T |
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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 42479009 - 42479059
Alignment:
| Q |
9 |
agacaatagaagagctgctgctgaggtaaaaagggacaatttggagctgcaaacatg |
65 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
42479009 |
agacaatagaagagctgctg------taaaaagtgacaatttggagctgcaaacatg |
42479059 |
T |
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