View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5853-5 (Length: 161)
Name: Solexa-NF5853-5
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5853-5 |
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Alignment Details
Target: chr8 (Bit Score: 46; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 19964447 - 19964390
Alignment:
| Q |
100 |
cacttgggtatgaatttgcaatactgatacattcaaggactacaataagaacactcat |
157 |
Q |
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| T |
19964447 |
cacttgggtatgaatttgcaatattgatacattcaatgactataataagaacactcat |
19964390 |
T |
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Target: chr4 (Bit Score: 46; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 19909623 - 19909687
Alignment:
| Q |
96 |
gagacacttgggtatgaatttgcaatactgatacattcaaggac--tacaataagaacactcata |
158 |
Q |
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| T |
19909623 |
gagacacttgggtatgaatttgcaataccgatacattcaaggactatataataagaacactcata |
19909687 |
T |
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