View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5853-52 (Length: 52)
Name: Solexa-NF5853-52
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5853-52 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 47; Significance: 9e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-19
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 45412723 - 45412769
Alignment:
| Q |
6 |
caatcattaccctcgaccatgaccaacccacttccaaacatgggatc |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45412723 |
caatcattaccctcgaccatgaccaacccacttccaaacatgggatc |
45412769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.0000000000009
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 45422126 - 45422166
Alignment:
| Q |
6 |
caatcattaccctcgaccatgaccaacccacttccaaacat |
46 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45422126 |
caatcattgccctcgaccatgaccaacccacttccaaacat |
45422166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 27; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 26836978 - 26837024
Alignment:
| Q |
6 |
caatcattaccctcgaccatgaccaacccacttccaaacatgggatc |
52 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||| | |||||||||||||| |
|
|
| T |
26836978 |
caatcattgccctcaaccatgaccaagccattcccaaacatgggatc |
26837024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University