View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5853-6 (Length: 156)
Name: Solexa-NF5853-6
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5853-6 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 3e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 38197153 - 38197301
Alignment:
| Q |
7 |
agttggtaacagaaaagtgctcatacaatatgtaggaatggactgtgcaactgatttaattaacacttctcttcctgctttggataaatgcttactcgac |
106 |
Q |
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| T |
38197153 |
agttggtaacagaaaagtgctcatacaatatgtaggaatggactgtgcaactgatttaattaacacttctcttcctgctttggataaatgcttacccgac |
38197252 |
T |
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| Q |
107 |
cattgttgtattttcctccaaactttgtctctcagatatccaaaaattg |
155 |
Q |
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| T |
38197253 |
cattgttgtattttcctccaaactatgtctctcagatatccaaaaattg |
38197301 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 25499551 - 25499449
Alignment:
| Q |
20 |
aaagtgctcatacaatatgtaggaatggactgtgcaactgatttaattaacacttctcttcctgctttggataaatgcttactcgaccattgttgtattt |
119 |
Q |
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|||||| |||| |||||||| ||||| || ||||| |||||||| || || || |||||||||||||| || | ||| || || |||||||||||||||| |
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| T |
25499551 |
aaagtggtcatgcaatatgtgggaattgattgtgccactgatttgatcaagacctctcttcctgctttcgagagatgttttctagaccattgttgtattt |
25499452 |
T |
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| Q |
120 |
tcc |
122 |
Q |
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||| |
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| T |
25499451 |
tcc |
25499449 |
T |
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