View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5853-7 (Length: 154)
Name: Solexa-NF5853-7
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5853-7 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 5e-76; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 5e-76
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 31102375 - 31102228
Alignment:
| Q |
7 |
atttcatgccacctagtatttcctttggaagtttccctgtcaattgatttgaagaaagatgaagcctacctagcttggttaaaccaataaaatctaatgg |
106 |
Q |
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| T |
31102375 |
atttcatgcctcctagtatttcctttggaagtttccctgtcaattgatttgaagaaagatgaagcctacctagcttggttaaaccaataaaatctaatgg |
31102276 |
T |
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| Q |
107 |
tataccaccagaaatattagtgttagatatcatgaaggtttcaagatc |
154 |
Q |
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| T |
31102275 |
tataccaccagaaatattagtgttagatatcatgaaggtttcaagatc |
31102228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 5e-42
Query Start/End: Original strand, 7 - 145
Target Start/End: Complemental strand, 31057940 - 31057802
Alignment:
| Q |
7 |
atttcatgccacctagtatttcctttggaagtttccctgtcaattgatttgaagaaagatgaagcctacctagcttggttaaaccaataaaatctaatgg |
106 |
Q |
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| T |
31057940 |
atttcatgcctcctagtacttccattgggagtttcccagtcaattgatttgaagaaagatgaagcacgcccagcttggttaaaccaataaaatctaatgg |
31057841 |
T |
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| Q |
107 |
tataccaccagaaatattagtgttagatatcatgaaggt |
145 |
Q |
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| T |
31057840 |
tataacaccagaaatattattgttagatattataaaggt |
31057802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 31183448 - 31183332
Alignment:
| Q |
26 |
ttcctttggaagtttccctgtcaattgatttgaagaaagatgaagcctacctagcttggttaaaccaataaaatctaatggtataccaccagaaatatta |
125 |
Q |
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| T |
31183448 |
ttcctttggaagtttcccagtcaattgatttgaagaaagatgaagcctacctagcttggtcaaacgagtaagttctaatggtatagcaccagaaatatta |
31183349 |
T |
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| Q |
126 |
gtgttagatatcatgaa |
142 |
Q |
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| T |
31183348 |
ttgttggatatcttgaa |
31183332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 31139729 - 31139622
Alignment:
| Q |
30 |
tttggaagtttccctgtcaattgatttgaagaaagatgaagcctacctagcttggttaaaccaataaaatctaatggtataccaccagaaatattagtgt |
129 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||| ||| |
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| T |
31139729 |
tttggaagtttcccagtaaattgatttgaagaaagatgaagcctacctagcttggttaaaccaataagttctaatggtataaccccagaaatattattgt |
31139630 |
T |
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| Q |
130 |
tagatatc |
137 |
Q |
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| T |
31139629 |
tggatatc |
31139622 |
T |
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