View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5853-8 (Length: 153)
Name: Solexa-NF5853-8
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5853-8 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 2e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 2e-78
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 39480023 - 39479876
Alignment:
| Q |
1 |
agagatagtatttgtttattaacagtttgatgcaatacaagacaggtagaatggtagtattatccaggccatggattacaatcaaatacgtggggtgcat |
100 |
Q |
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| T |
39480023 |
agagatagtatttgtttattaacagtttgatgcaatacaagacaggtagaatggtagtattatccaggccatggattacaatcaaatacgtggggtgcat |
39479924 |
T |
|
| Q |
101 |
tctagtgtatgtatctaataaacaaacttaatctgcagataacatcat |
148 |
Q |
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| T |
39479923 |
tctagtgtatgtatctaataaacaaacttaatctgcagataacatcat |
39479876 |
T |
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