View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5854-1 (Length: 204)
Name: Solexa-NF5854-1
Description: NF5854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5854-1 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 39676526 - 39676323
Alignment:
| Q |
1 |
gatcttccaaaaagaatttcaactgagaagatcttttagcagagttgaaccttacgacaggagctctggtcattccatcacgaaggacaactgcggaagc |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39676526 |
gatcttccaaaaagaatttcaactgagaagctcttttagcggagttgaatcttacgacaggagctctggtcattccatcacgaaggacaactgccgaagc |
39676427 |
T |
|
| Q |
101 |
accaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgtattctttactatcgagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39676426 |
accaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgtattctttaccatcgagc |
39676327 |
T |
|
| Q |
201 |
aaca |
204 |
Q |
| |
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|||| |
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| T |
39676326 |
aaca |
39676323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 10046582 - 10046379
Alignment:
| Q |
1 |
gatcttccaaaaagaatttcaactgagaagatcttttagcagagttgaaccttacgacaggagctctggtcattccatcacgaaggacaactgcggaagc |
100 |
Q |
| |
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||||||| ||||| || || |||||||||| ||||||||| |||||||| |||||||| || ||||||||||| |||||||| |||||||| |||||||| |
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| T |
10046582 |
gatcttctaaaaaaaactttaactgagaagctcttttagcggagttgaatcttacgacgggggctctggtcatgccatcacggaggacaaccgcggaagc |
10046483 |
T |
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| Q |
101 |
accaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgtattctttactatcgagc |
200 |
Q |
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|||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |||||||| ||||| ||||| ||||| | ||| ||| |
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| T |
10046482 |
accaccggaaacataaatagctttacaacctctattagtacttgcaaccaaacaaccttccgtcgttgccatcggcaccgtgtactctttcccatcaagc |
10046383 |
T |
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| Q |
201 |
aaca |
204 |
Q |
| |
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|||| |
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| T |
10046382 |
aaca |
10046379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 10873343 - 10873526
Alignment:
| Q |
1 |
gatcttccaaaaagaatttcaactgagaagatcttttagcagagttgaaccttacgacaggagctctggtcattccatcacgaaggacaactgcggaagc |
100 |
Q |
| |
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||||||| |||||||||||||||||||||| |||||| || |||||||| |||||||| || |||| ||||||||| ||||| |||||||| |||||||| |
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| T |
10873343 |
gatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacgactggggctcgggtcattccgtcacggaggacaacggcggaagc |
10873442 |
T |
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| Q |
101 |
accaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgta |
184 |
Q |
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|||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| || |||||||| ||||| ||||| |
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| T |
10873443 |
accaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgta |
10873526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 10878414 - 10878597
Alignment:
| Q |
1 |
gatcttccaaaaagaatttcaactgagaagatcttttagcagagttgaaccttacgacaggagctctggtcattccatcacgaaggacaactgcggaagc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| || |||||||| |||||||| || |||| ||||||||| ||||| |||||||| |||||||| |
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| T |
10878414 |
gatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacgactggggctcgggtcattccgtcacggaggacaacggcggaagc |
10878513 |
T |
|
| Q |
101 |
accaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgta |
184 |
Q |
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|||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| || |||||||| ||||| ||||| |
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| T |
10878514 |
accaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgta |
10878597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 10883485 - 10883668
Alignment:
| Q |
1 |
gatcttccaaaaagaatttcaactgagaagatcttttagcagagttgaaccttacgacaggagctctggtcattccatcacgaaggacaactgcggaagc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| || |||||||| |||||||| || |||| ||||||||| ||||| |||||||| |||||||| |
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| T |
10883485 |
gatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacgactggggctcgggtcattccgtcacggaggacaacggcggaagc |
10883584 |
T |
|
| Q |
101 |
accaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgta |
184 |
Q |
| |
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|||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| || |||||||| ||||| ||||| |
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| T |
10883585 |
accaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgta |
10883668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 10887403 - 10887606
Alignment:
| Q |
1 |
gatcttccaaaaagaatttcaactgagaagatcttttagcagagttgaaccttacgacaggagctctggtcattccatcacgaaggacaactgcggaagc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| || |||||||| ||||| || || |||||||||||||| || || || ||||| |||||||| |
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| T |
10887403 |
gatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacaacgggggctctggtcattccgtcgcggagcacaacagcggaagc |
10887502 |
T |
|
| Q |
101 |
accaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgtattctttactatcgagc |
200 |
Q |
| |
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||| || |||||||||||||||||||| ||||||||||| |||||||| ||||||||||| || |||||||| ||||| |||||||| || | |||||| |
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| T |
10887503 |
acctccggaaacataaatagctttacagcctctgttggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtattcattcccgtcgagc |
10887602 |
T |
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| Q |
201 |
aaca |
204 |
Q |
| |
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|||| |
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|
| T |
10887603 |
aaca |
10887606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 10866962 - 10866779
Alignment:
| Q |
1 |
gatcttccaaaaagaatttcaactgagaagatcttttagcagagttgaaccttacgacaggagctctggtcattccatcacgaaggacaactgcggaagc |
100 |
Q |
| |
|
||||||| ||||||||||||||||| |||| |||||| ||||||||||| ||||| || || |||||||||||||| || || || ||||| |||||||| |
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| T |
10866962 |
gatcttctaaaaagaatttcaactgggaagctcttttggcagagttgaatcttacaacgggggctctggtcattccgtcgcggagcacaaccgcggaagc |
10866863 |
T |
|
| Q |
101 |
accaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgta |
184 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| || |||||||| ||||| ||||| |
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| T |
10866862 |
cccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgta |
10866779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 37948325 - 37948236
Alignment:
| Q |
98 |
agcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgtattc |
187 |
Q |
| |
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|||||||||||||||||| ||||||||||| ||||| || ||||| ||||| ||||| ||||| || || |||||||| || |||||||| |
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| T |
37948325 |
agcaccaccagaaacatatatagctttacaccctctattagtactagcaaccaaacacccttctgtagtcgccattggaacagtgtattc |
37948236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 48 - 184
Target Start/End: Original strand, 30709429 - 30709565
Alignment:
| Q |
48 |
aaccttacgacaggagctctggtcattccatcacgaaggacaactgcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaa |
147 |
Q |
| |
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||||| || ||||| ||||||||||||||||| | ||| | ||| | ||||| ||||||||||||| |||||||||||| ||||| || |||||||||| |
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| T |
30709429 |
aacctaacaacaggtgctctggtcattccatctctaagcaaaacagaagaagctccaccagaaacatgaatagctttacaccctctattagtacttgcaa |
30709528 |
T |
|
| Q |
148 |
ctaaacaaccttcagtggttgccattggcacggtgta |
184 |
Q |
| |
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| | ||| ||||||||||| ||||| ||||| ||||| |
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| T |
30709529 |
caagacacccttcagtggtagccatgggcacagtgta |
30709565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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