View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5854-11 (Length: 57)
Name: Solexa-NF5854-11
Description: NF5854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5854-11 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 50; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 41967355 - 41967404
Alignment:
| Q |
8 |
aattaaaggttactaatccaaatagtcttgggtccaagaatgtaaatgat |
57 |
Q |
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| T |
41967355 |
aattaaaggttactaatccaaatagtcttgggtccaagaatgtaaatgat |
41967404 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 1234245 - 1234294
Alignment:
| Q |
8 |
aattaaaggttactaatccaaatagtcttgggtccaagaatgtaaatgat |
57 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
1234245 |
aattaaaggttaataatccaaatagtcttaggtccaagaatgtaaatgat |
1234294 |
T |
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