View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5854-4 (Length: 152)
Name: Solexa-NF5854-4
Description: NF5854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5854-4 |
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| [»] scaffold0006 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 129; Significance: 4e-67; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 188260 - 188108
Alignment:
| Q |
1 |
cagcagtgcagaaacagggagcactcaaggactgtttgtgtgtgcttcccttgttattttgctttagtttttt-ggtgttgtaacttgctgctgctgtta |
99 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
188260 |
cagcagtgcagaaacagggagcacccaaggactgtttgtgtgtgcttcccttgttattttgctttagtttttttggtgctgtaacttgctgctgctgtta |
188161 |
T |
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| Q |
100 |
gaactttgtatttctttactttgctaatgttggtagttcttataccttcctat |
152 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
188160 |
gaactttgtatttctttactttgctagagttggtagttcttataccttcctat |
188108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 1e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 22378484 - 22378635
Alignment:
| Q |
1 |
cagcagtgcagaaacagggagcactcaaggactgtttgtgtgtgcttcccttgttattttgctttagttttttggtgttgtaacttgctgctgctgttag |
100 |
Q |
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|||||||||||||| |||| | || |||||||||||||||||||||||||| ||||||||| |||||||||||||| | |||||||||||||||||||| |
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| T |
22378484 |
cagcagtgcagaaatagggcgaaccaaaggactgtttgtgtgtgcttcccttcttattttgcattagttttttggtgctctaacttgctgctgctgttag |
22378583 |
T |
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| Q |
101 |
aactttgtatttctttactttgctaatgttggtagttcttataccttcctat |
152 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22378584 |
aactttgtatttctttactttgctagagttggtagttcttataccttcctat |
22378635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 17524698 - 17524554
Alignment:
| Q |
1 |
cagcagtgcagaaacagggagcactcaaggactgtttgtgtgtgcttcccttgttattttgctttagttttttggtgttgtaacttgctgctgctgttag |
100 |
Q |
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|||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17524698 |
cagcagtgcagaaacacggagtacccaaggactgtttgtgtgtgcttcccttgttattttgctttagttttttggtgttgta-------gctgctgttaa |
17524606 |
T |
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| Q |
101 |
aactttgtatttctttactttgctaatgttggtagttcttataccttcctat |
152 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
17524605 |
aactttgtatttatttactttgctagagttggtagttcttataccttcctat |
17524554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 5e-51; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 5e-51
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 5023963 - 5024107
Alignment:
| Q |
1 |
cagcagtgcagaaacagggagcactcaaggactgtttgtgtgtgcttcccttgttattttgctttagttttttggtgttgtaacttgctgctgctgttag |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
5023963 |
cagcagtgcagaaacagggagcacctaaggactgtttgtgtgtgcttcccttgttattttgctttagttttttggtgatgta-------gctgctgttaa |
5024055 |
T |
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| Q |
101 |
aactttgtatttctttactttgctaatgttggtagttcttataccttcctat |
152 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5024056 |
aactttgtatttctttactttgctagagttggtagttcttataccttcctat |
5024107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 1933788 - 1933643
Alignment:
| Q |
1 |
cagcagtgcagaaacagggagcactcaaggactgtttgtgtgtgcttcccttgttattttgctttagtt-ttttggtgttgtaacttgctgctgctgtta |
99 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||| |
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| T |
1933788 |
cagcagtgcagaaatagggagcacccaaggactgtttgtgtgtgcttcccttgttattttgctttagtttttttggtgatgta-------gctgttgtta |
1933696 |
T |
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| Q |
100 |
gaactttgtatttctttactttgctaatgttggtagttcttataccttcctat |
152 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1933695 |
taactttgtatttctttactttgctagagttggtagttcttataccttcctat |
1933643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 5e-42
Query Start/End: Original strand, 2 - 152
Target Start/End: Complemental strand, 26093962 - 26093807
Alignment:
| Q |
2 |
agcagtgcagaaacagggagcactcaaggactgtttgtgtgtgcttcccttgttattttgctttagtt-ttttggtgttgtaacttgctgctgctgttag |
100 |
Q |
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|||||||||||||||||| |||| ||| || ||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| |
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| T |
26093962 |
agcagtgcagaaacagggtgcacccaacgaatgtttgtgtttgcttcccttgttattttgctttagtttttttggtgatgtaacttgctgctactgttag |
26093863 |
T |
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| Q |
101 |
aactttgta----tttctttactttgctaatgttggtagttcttataccttcctat |
152 |
Q |
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|| |||||| |||||||||||||||| |||||| |||||||||||||||||| |
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| T |
26093862 |
aattttgtatgtgtttctttactttgctagagttggtggttcttataccttcctat |
26093807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 22735794 - 22735702
Alignment:
| Q |
8 |
gcagaaacagggagcactcaaggactgtttgtgtgtgcttcccttgttattttgctttagtt-ttttggtgttgtaacttgctgctgctgttaga |
101 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
22735794 |
gcagaaacagggagcacccaaggact--ttgtgtgtgcttcccttgttattttgctttagtttttttggtgatgtaacttgctgctgctgttaga |
22735702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 5e-48; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 12839297 - 12839139
Alignment:
| Q |
1 |
cagcagtgcagaaacagggagcactcaaggactgtttgtgtgtgcttcccttgttattttgctttagttttttggtgttgtaa-------cttgctgctg |
93 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||| |||| ||||| |
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| T |
12839297 |
cagcagtgcagaaacagggagcacccaaggactgtttgtgtgtgcttcccttgttattttgttttagtcttttggtgctgtaacatgctgcttgttgctg |
12839198 |
T |
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| Q |
94 |
ctgttagaactttgtatttctttactttgctaatgttggtagttcttataccttcctat |
152 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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|
| T |
12839197 |
ctgttagaactttgtatttctttactttgctagagttggtaaatcttataccttcctat |
12839139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 31387673 - 31387537
Alignment:
| Q |
8 |
gcagaaacagggagcactcaaggactgtttgtgtgtgcttcccttgttattttgctttagtt-ttttggtgttgtaacttgctgctgctgttagaacttt |
106 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
31387673 |
gcagaaacagggagcacccaaggact--ttgtgtgtgcttcccttgttattttgctttagtttttttggtgatgtaacttgctgctgctgttagaac--- |
31387579 |
T |
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| Q |
107 |
gtatttctttactttgctaatgttggtagttcttataccttccta |
151 |
Q |
| |
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||||||||||||| || |||||||||||||||||||||||| |
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| T |
31387578 |
---tttctttactttgatagagttggtagttcttataccttccta |
31387537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 6428754 - 6428598
Alignment:
| Q |
1 |
cagcagtgcagaaacagggagcactcaaggactgtttgtgtgtgcttcccttgttattttgctttagtt-ttttggtgttgtaacttgctgctgctgtta |
99 |
Q |
| |
|
|||||||||||||| |||| |||| ||| | |||||||||||||||||||| |||||||||||||||| |||||||| ||||||||| |||| |||||| |
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| T |
6428754 |
cagcagtgcagaaatagggtgcacccaacaaatgtttgtgtgtgcttcccttcttattttgctttagtttttttggtgatgtaacttgatgctactgtta |
6428655 |
T |
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| Q |
100 |
gaactt----tgtatttctttactttgctaatgttggtagttcttataccttcctat |
152 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
6428654 |
gaactttgtatgtatttctttactttgctagagttggtagttcttgtaccttcctat |
6428598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 25994023 - 25993943
Alignment:
| Q |
1 |
cagcagtgcagaaacagggagcactcaaggactgtttgtgtgtgcttcccttgttattttgctttagttttttggtgttgt |
81 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25994023 |
cagcagtgcagaaacagggagcacccaaggactgtttgtgtgtgcttcccttgttattttgctttagttttttggtgttgt |
25993943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 25552856 - 25552777
Alignment:
| Q |
2 |
agcagtgcagaaacagggagcactcaaggactgtttgtgtgtgcttcccttgttattttgctttagttttttggtgttgt |
81 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25552856 |
agcagtgcagaaacagggagcacccaaggactgtttgtgtgtgcttcccttgtctttttgctttagttttttggtgttgt |
25552777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 25991834 - 25991770
Alignment:
| Q |
84 |
cttgctgctgctgttagaactttgtatttctttactttgctaatgttggtagttcttataccttc |
148 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25991834 |
cttgctgctgttgttagaactttgtatttctttactttgctagagttggtagttcttataccttc |
25991770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 1e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 41078387 - 41078523
Alignment:
| Q |
8 |
gcagaaacagggagcactcaaggactgtttgtgtgtgcttcccttgttattttgctttag-ttttttggtgttgtaacttgctgctgctgttagaacttt |
106 |
Q |
| |
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||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
41078387 |
gcagaaacagggagcacccaaggact--ttgtgtgtgcttcccttgttattttgctttagtttttttggtgatgtaacttgctgctgctgttagaac--- |
41078481 |
T |
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| Q |
107 |
gtatttctttactttgctaatgttggtagttcttataccttccta |
151 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||| |
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| T |
41078482 |
---tttctttactttgatagagttggtagttcttataccttccta |
41078523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 35 - 151
Target Start/End: Original strand, 45469511 - 45469632
Alignment:
| Q |
35 |
tttgtgtgtgcttcccttgttattttgctttag-ttttttggtgttgtaacttgctgctgctgttagaactt----tgtatttctttactttgctaatgt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| || |||||||| ||||||||||| || |
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| T |
45469511 |
tttgtgtgtgcttcccttgttattttgctttagtttttttggcgatgtaacttgctgctgctgttagaagtttgtatgtatttccttactttgctagagt |
45469610 |
T |
|
| Q |
130 |
tggtagttcttataccttccta |
151 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
45469611 |
tggtagttcttataccttccta |
45469632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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