View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5854-5 (Length: 142)

Name: Solexa-NF5854-5
Description: NF5854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5854-5
Solexa-NF5854-5
[»] chr5 (12 HSPs)
chr5 (8-142)||(32837603-32837737)
chr5 (46-142)||(21333087-21333183)
chr5 (46-142)||(21336103-21336199)
chr5 (57-129)||(22937356-22937428)
chr5 (57-128)||(28441554-28441625)
chr5 (57-128)||(26547705-26547776)
chr5 (57-128)||(26551264-26551335)
chr5 (58-126)||(3194814-3194883)
chr5 (71-126)||(14376231-14376286)
chr5 (58-126)||(34653187-34653256)
chr5 (57-99)||(2452953-2452995)
chr5 (77-128)||(43491408-43491459)
[»] chr8 (10 HSPs)
chr8 (8-142)||(45155676-45155810)
chr8 (57-128)||(5963868-5963939)
chr8 (57-124)||(452767-452834)
chr8 (56-128)||(25591893-25591965)
chr8 (57-129)||(18696359-18696431)
chr8 (56-128)||(18721701-18721773)
chr8 (56-128)||(25595077-25595149)
chr8 (56-128)||(23613168-23613240)
chr8 (50-108)||(31984603-31984661)
chr8 (76-124)||(10663546-10663595)
[»] chr7 (7 HSPs)
chr7 (46-142)||(26557107-26557204)
chr7 (46-116)||(8276610-8276680)
chr7 (57-128)||(11825791-11825862)
chr7 (57-128)||(8397471-8397541)
chr7 (57-128)||(10431936-10432007)
chr7 (60-128)||(22256875-22256944)
chr7 (77-116)||(36843638-36843677)
[»] chr6 (7 HSPs)
chr6 (7-136)||(2371929-2372055)
chr6 (57-128)||(5738504-5738575)
chr6 (57-124)||(11410379-11410446)
chr6 (56-128)||(23388519-23388591)
chr6 (57-128)||(28848474-28848545)
chr6 (57-127)||(1126150-1126220)
chr6 (56-128)||(9953599-9953671)
[»] scaffold0381 (1 HSPs)
scaffold0381 (57-128)||(5819-5890)
[»] chr4 (14 HSPs)
chr4 (57-128)||(27013894-27013965)
chr4 (57-129)||(12237903-12237975)
chr4 (62-128)||(5670198-5670264)
chr4 (57-127)||(37103636-37103706)
chr4 (62-127)||(5672517-5672582)
chr4 (58-128)||(18859391-18859461)
chr4 (57-126)||(5681060-5681129)
chr4 (71-126)||(11703020-11703075)
chr4 (57-103)||(40617139-40617185)
chr4 (64-104)||(7642770-7642810)
chr4 (57-108)||(19864926-19864977)
chr4 (71-126)||(33400754-33400808)
chr4 (57-127)||(19859943-19860013)
chr4 (57-126)||(10385579-10385648)
[»] chr3 (12 HSPs)
chr3 (56-128)||(30158472-30158544)
chr3 (56-128)||(36037396-36037468)
chr3 (57-128)||(10884575-10884646)
chr3 (56-127)||(17532041-17532112)
chr3 (77-126)||(55032259-55032308)
chr3 (57-128)||(2280049-2280120)
chr3 (60-126)||(9154434-9154500)
chr3 (58-103)||(44508425-44508470)
chr3 (59-123)||(26551211-26551275)
chr3 (57-128)||(10107004-10107075)
chr3 (77-126)||(55035268-55035317)
chr3 (57-129)||(9392453-9392525)
[»] chr2 (13 HSPs)
chr2 (56-127)||(26365545-26365616)
chr2 (57-124)||(29435365-29435432)
chr2 (57-126)||(4577466-4577535)
chr2 (57-127)||(10600578-10600648)
chr2 (57-127)||(38005604-38005674)
chr2 (57-129)||(15704403-15704475)
chr2 (57-116)||(15719670-15719729)
chr2 (60-126)||(1503866-1503931)
chr2 (58-126)||(38325984-38326053)
chr2 (58-126)||(38326706-38326775)
chr2 (57-128)||(25873788-25873859)
chr2 (60-126)||(1507070-1507135)
chr2 (57-127)||(25870421-25870491)
[»] chr1 (4 HSPs)
chr1 (57-128)||(37641479-37641550)
chr1 (57-124)||(49715985-49716052)
chr1 (57-124)||(49719468-49719535)
chr1 (57-128)||(1950874-1950945)
[»] scaffold0360 (1 HSPs)
scaffold0360 (57-126)||(2095-2164)
[»] scaffold0062 (2 HSPs)
scaffold0062 (57-129)||(53315-53387)
scaffold0062 (57-116)||(68227-68286)
[»] scaffold0035 (1 HSPs)
scaffold0035 (57-128)||(62148-62219)
[»] scaffold0214 (3 HSPs)
scaffold0214 (57-126)||(13222-13291)
scaffold0214 (57-126)||(19672-19741)
scaffold0214 (57-126)||(27238-27307)
[»] scaffold0080 (1 HSPs)
scaffold0080 (56-128)||(26819-26891)
[»] scaffold0014 (1 HSPs)
scaffold0014 (50-108)||(226961-227019)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 3e-37; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 32837603 - 32837737
Alignment:
Q  8 aaaagaacatcaatcgtagtgattgagaagtaaatgaagagcaagcccacaacgacggaactttatcgatttattttctttattatgttgtttatttctt 107  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||  |||| |||||| | |  || ||||||||||||| |||||||||||||||||    
T  32837603 aaaagaacatcaaccgtagtgattgagaagtaattgaagagcaagccggcaactacggaattctgacggtttattttctttactatgttgtttatttctt 32837702  T
Q  108 ttatcatgtatagctaatttctagagattaagtct 142  Q
    ||||||||| ||||||||||  |||||||||||||    
T  32837703 ttatcatgtctagctaattttcagagattaagtct 32837737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 21333183 - 21333087
Alignment:
Q  46 gagcaagcccacaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtct 142  Q
    |||||||||  || |||||||||| ||||| ||||||||||||| ||||||||||||| ||||||| |||| ||||||||||  |||||||||||||    
T  21333183 gagcaagccggcagcgacggaactctatcggtttattttctttactatgttgtttattccttttattatgtctagctaattttcagagattaagtct 21333087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 21336199 - 21336103
Alignment:
Q  46 gagcaagcccacaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtct 142  Q
    |||||||||  || |||||||||| ||||| ||||||||||||| ||||||||||||| ||||||| |||| ||||||||||  |||||||||||||    
T  21336199 gagcaagccggcagcgacggaactctatcggtttattttctttactatgttgtttattccttttattatgtctagctaattttcagagattaagtct 21336103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 22937428 - 22937356
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttct 129  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||  ||| ||||||| ||||||||||||    
T  22937428 caacgacggaactctatcggtttattttctttactatgttgtttattattttaatcatgtctagctaatttct 22937356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 28441625 - 28441554
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||||||| ||||| ||||||||||||| || |||||||||||||||  |||||| |||||||||||    
T  28441625 caacgacggaactctatcggtttattttctttactacgttgtttatttctttattcatgtctagctaatttc 28441554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 26547705 - 26547776
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||||||| ||||| |||||| | ||||||||||||||||||  ||| ||||||| |||||||||||    
T  26547705 caacgacggaactctatcggtttattgtttttattatgttgtttattcgtttgatcatgtctagctaatttc 26547776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 26551264 - 26551335
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||||||| ||||| |||||| | ||||||||||||||||||  ||| ||||||| |||||||||||    
T  26551264 caacgacggaactctatcggtttattgtttttattatgttgtttattcgtttgatcatgtctagctaatttc 26551335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 3194814 - 3194883
Alignment:
Q  58 aacgacggaactttatcgatttattttctttattatgttgtttatt-tcttttatcatgtatagctaatt 126  Q
    |||||||||| | ||||| ||||||||||||| ||||||||||||| | ||| |||||||||||||||||    
T  3194814 aacgacggaattctatcggtttattttctttactatgttgtttattctttttaatcatgtatagctaatt 3194883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 14376286 - 14376231
Alignment:
Q  71 tatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 126  Q
    ||||| ||||||||||||| ||||||||||||| |||||||||||  |||||||||    
T  14376286 tatcggtttattttctttactatgttgtttattccttttatcatgcctagctaatt 14376231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 34653256 - 34653187
Alignment:
Q  58 aacgacggaactttatcgatttattttctttattatgttgtttatt-tcttttatcatgtatagctaatt 126  Q
    |||||||||| | ||||| ||||||||||||| ||||||||||||| | ||| ||||||| |||||||||    
T  34653256 aacgacggaattctatcggtttattttctttactatgttgtttattctttttaatcatgtctagctaatt 34653187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 2452953 - 2452995
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtt 99  Q
    ||||||||||||| ||| ||||||||||||||| |||||||||    
T  2452953 caacgacggaactctatggatttattttctttactatgttgtt 2452995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 43491408 - 43491459
Alignment:
Q  77 tttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||||||| |||||||||||| | ||| | ||||| |||||||||||    
T  43491408 tttattttctttactatgttgtttatgtatttaaccatgtctagctaatttc 43491459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 4e-30; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 45155810 - 45155676
Alignment:
Q  8 aaaagaacatcaatcgtagtgattgagaagtaaatgaagagcaagcccacaacgacggaactttatcgatttattttctttattatgttgtttatttctt 107  Q
    |||||||||| ||  |||| ||||||||||||| ||| |||||||||  ||||||||||||| |||   ||||||||||||| |||||||||||||||||    
T  45155810 aaaagaacatgaacagtagcgattgagaagtaattgaggagcaagccggcaacgacggaactctatatgtttattttctttactatgttgtttatttctt 45155711  T
Q  108 ttatcatgtatagctaatttctagagattaagtct 142  Q
    | ||||||| |||||||||| ||||||||| ||||    
T  45155710 taatcatgtctagctaatttttagagattaggtct 45155676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 5963868 - 5963939
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||  ||| ||||||| |||||||||||    
T  5963868 caacgacggaactctatcggtttattttctttattatgttgtttattcgtttgatcatgtctagctaatttc 5963939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 452767 - 452834
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaa 124  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||  ||| ||||||| |||||||    
T  452767 caacgacagaactctatcgatttattttctttattatgttgtttattaatttgatcatgtctagctaa 452834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 25591965 - 25591893
Alignment:
Q  56 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||| |||| ||||| ||||||||||||| |||||||||||| | ||| ||||||| |||||||||||    
T  25591965 acaacgacgaaactctatcggtttattttctttactatgttgtttatgtatttaatcatgtctagctaatttc 25591893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 18696431 - 18696359
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttct 129  Q
    |||||||| |||| ||||| ||||||||||||| |||||||||||||| ||| ||||||| ||| ||| ||||    
T  18696431 caacgacgaaactctatcggtttattttctttactatgttgtttatttatttgatcatgtctagttaaattct 18696359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 18721773 - 18721701
Alignment:
Q  56 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||| |||| ||||| ||||||||||||| |||||||||||| | ||| | ||||| |||||||||||    
T  18721773 acaacgacgaaactctatcggtttattttctttactatgttgtttatgtatttaaccatgtctagctaatttc 18721701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 25595149 - 25595077
Alignment:
Q  56 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||| |||| ||||| |||||||| |||| |||||||||||| | ||| ||||||| |||||||||||    
T  25595149 acaacgacgaaactctatcggtttattttttttactatgttgtttatgtatttaatcatgtctagctaatttc 25595077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 23613168 - 23613240
Alignment:
Q  56 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||| |||| ||||| ||||||||||||| |||||| ||||| | ||| | ||||| |||||||||||    
T  23613168 acaacgacgaaactctatcggtttattttctttactatgttatttatgtatttaaccatgtctagctaatttc 23613240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 31984603 - 31984661
Alignment:
Q  50 aagcccacaacgacggaactttatcgatttattttctttattatgttgtttatttcttt 108  Q
    ||||| ||||||||| | || ||||| ||||||||||||| ||||||||||||| ||||    
T  31984603 aagccgacaacgacgaagctctatcggtttattttctttactatgttgtttattccttt 31984661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 10663546 - 10663595
Alignment:
Q  76 atttattttctttatt-atgttgtttatttcttttatcatgtatagctaa 124  Q
    |||||||||||||||| |||||||||||| |||| ||||||| |||||||    
T  10663546 atttattttctttatttatgttgtttattcctttgatcatgtctagctaa 10663595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 9e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 26557107 - 26557204
Alignment:
Q  46 gagcaagcccacaacgacggaactttatcgatttattttcttt-attatgttgtttatttcttttatcatgtatagctaatttctagagattaagtct 142  Q
    |||||||||  ||||||||||||| ||||  |||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  26557107 gagcaagccggcaacgacggaactctatcagtttatttttttttattatgttgtttatttcttttatcatgtctagctaatttccagagattaagtct 26557204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 8276610 - 8276680
Alignment:
Q  46 gagcaagcccacaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgt 116  Q
    |||||||||  ||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||    
T  8276610 gagcaagccggcaacgacggaactctatcagtttattttctttattatgttgtttatttcttttatcatgt 8276680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 11825862 - 11825791
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||  ||| ||||||| |||||||||||    
T  11825862 caacgacggaactctatcggtttattttctttattatgttgtttattcgtttgatcatgtctagctaatttc 11825791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 8397471 - 8397541
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||||||| || || ||||||||||||||||||||||||||| |||| ||||||| |||||||||||    
T  8397471 caacgacggaactcta-cggtttattttctttattatgttgtttattcctttgatcatgtctagctaatttc 8397541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 10431936 - 10432007
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||||||| ||  | ||||||||||||| || |||||||||||||||  |||||| |||||||||||    
T  10431936 caacgacggaactctaatggtttattttctttactaggttgtttatttctttattcatgtctagctaatttc 10432007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 22256875 - 22256944
Alignment:
Q  60 cgacggaactttatcgatttattttctttattatgttg-tttatttcttttatcatgtatagctaatttc 128  Q
    ||||| |||| ||||| ||||||||||||||||||||| ||| ||| ||| ||||||| ||| |||||||    
T  22256875 cgacgaaactctatcggtttattttctttattatgttgttttttttatttaatcatgtctagttaatttc 22256944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 36843677 - 36843638
Alignment:
Q  77 tttattttctttattatgttgtttatttcttttatcatgt 116  Q
    |||||||||||||||||||||||||||  ||| |||||||    
T  36843677 tttattttctttattatgttgtttattcttttaatcatgt 36843638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 1e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 2371929 - 2372055
Alignment:
Q  7 aaaaagaacatcaatcgtagtgattgagaagtaaatgaagagcaagcccacaacgacggaactttatcgatttattttctttattatgttgtttatttct 106  Q
    |||||||||||||| ||||||||||| ||||||| ||||||| |||||   |||||| ||||| ||||| |||||||| |||| |||| |||||||||||    
T  2371929 aaaaagaacatcaaccgtagtgattgtgaagtaactgaagagtaagccggtaacgacagaactctatcggtttattttttttactatgctgtttatttct 2372028  T
Q  107 tttatcatgtatagctaatttctagagatt 136  Q
    |||   |||| ||||||||||| |||||||    
T  2372029 ttt---atgtctagctaatttccagagatt 2372055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 5738575 - 5738504
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||  ||| ||||||| |||||||||||    
T  5738575 caacgacggaactctatcggtttattttctttactatgttgtttattattttaatcatgtctagctaatttc 5738504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 11410379 - 11410446
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaa 124  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||| ||| ||||||| |||||||    
T  11410379 caacgacggaactctatcggtttattttctttactatgttgtttatttatttgatcatgtctagctaa 11410446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 23388591 - 23388519
Alignment:
Q  56 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||| |||| ||||| ||||||||||||| |||||||||||| | ||| | ||||| |||||||||||    
T  23388591 acaacgacgaaactctatcggtttattttctttactatgttgtttatgtatttaaccatgtctagctaatttc 23388519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 28848474 - 28848545
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    |||||| ||||||  |||||||||||||||||| |||||||||||| | ||| ||||||| ||| |||||||    
T  28848474 caacgatggaactccatcgatttattttctttactatgttgtttatgtatttgatcatgtctagttaatttc 28848545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 1126220 - 1126150
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaattt 127  Q
    ||||||||||||| ||||| |||||| | |||| ||||||||||||| ||||||  |||| ||||||||||    
T  1126220 caacgacggaactctatcggtttattgtttttactatgttgtttattccttttactatgtctagctaattt 1126150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 9953599 - 9953671
Alignment:
Q  56 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||| |||| |||||  ||||||| ||||||||||||||||| | ||| | ||||| |||||||||||    
T  9953599 acaacgacgaaactctatcggcttattttttttattatgttgtttatgtatttaaccatgtctagctaatttc 9953671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 48; Significance: 8e-19; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 5890 - 5819
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||||||    
T  5890 caacgacggaactctatcgatttattttctttactatgttgtttattattttaatcatgtctagctaatttc 5819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 8e-19; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 27013894 - 27013965
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||||||    
T  27013894 caacgacggaactctatcgatttattttctttactatgttgtttattattttaatcatgtctagctaatttc 27013965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 12237903 - 12237975
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttct 129  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||  ||  ||||||| ||||||||||||    
T  12237903 caacgacggaattttatcggtttattttctttattatgttgtttattatttcaatcatgtttagctaatttct 12237975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 5670198 - 5670264
Alignment:
Q  62 acggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    |||||||| ||||| ||||||||||||  |||||||||||||||||| ||||||| |||||||||||    
T  5670198 acggaactctatcggtttattttctttgctatgttgtttatttctttaatcatgtctagctaatttc 5670264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 37103706 - 37103636
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaattt 127  Q
    ||||| || |||| ||||| |||||||||||||||||||||||||||  ||||||||||| ||||||||||    
T  37103706 caacggcgaaactctatcggtttattttctttattatgttgtttattctttttatcatgtctagctaattt 37103636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 5672517 - 5672582
Alignment:
Q  62 acggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaattt 127  Q
    |||||||| ||||| ||||||||||||  |||||||||||||||||| ||||||| ||||||||||    
T  5672517 acggaactctatcggtttattttctttgctatgttgtttatttctttaatcatgtctagctaattt 5672582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 18859391 - 18859461
Alignment:
Q  58 aacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    |||||||||||| |||| ||||||| |||||| |||||||||||||  ||| ||||||| |||||||||||    
T  18859391 aacgacggaactctatcaatttattgtctttagtatgttgtttattcgtttgatcatgtttagctaatttc 18859461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 5681060 - 5681129
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 126  Q
    ||||||||||||| ||||| ||||||||||||| ||| ||||||||||||||  |||||| || ||||||    
T  5681060 caacgacggaactctatcggtttattttctttactatattgtttatttctttattcatgtctaactaatt 5681129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 11703075 - 11703020
Alignment:
Q  71 tatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 126  Q
    ||||| ||||||||||||| |||||||||||||| ||| ||||||| |||||||||    
T  11703075 tatcggtttattttctttactatgttgtttatttatttaatcatgtctagctaatt 11703020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 40617185 - 40617139
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatt 103  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||    
T  40617185 caacgacggaactctatcggtttattttctttactatgttgtttatt 40617139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 7642810 - 7642770
Alignment:
Q  64 ggaactttatcgatttattttctttattatgttgtttattt 104  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  7642810 ggaactttatcgatttattttttttactatgttgtttattt 7642770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 19864977 - 19864926
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttt 108  Q
    ||||||||||||| ||||| ||||||||||||| ||| ||||||||| ||||    
T  19864977 caacgacggaactctatcggtttattttctttactatcttgtttattccttt 19864926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 33400808 - 33400754
Alignment:
Q  71 tatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 126  Q
    ||||||||||||||||||| ||||||||||| |||||| ||||||| || ||||||    
T  33400808 tatcgatttattttctttactatgttgttta-ttctttaatcatgtctatctaatt 33400754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 19860013 - 19859943
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaattt 127  Q
    |||||||||||||| |||| ||||||||||||| ||| ||||||| | |||| |  |||| ||||||||||    
T  19860013 caacgacggaacttcatcggtttattttctttactatattgtttagtcctttaactatgtctagctaattt 19859943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 10385579 - 10385648
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 126  Q
    ||||||||||||| |||  ||||||||| |||| |||||||||| |||||||  |||||| ||| |||||    
T  10385579 caacgacggaactctatgaatttattttttttactatgttgtttgtttctttattcatgtctagttaatt 10385648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 5e-17; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 30158544 - 30158472
Alignment:
Q  56 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||| |||||| ||||| |||||||||||||||||||||||||||  ||| ||||||| |||||||||||    
T  30158544 acaacgatggaactctatcggtttattttctttattatgttgtttattcgtttgatcatgtctagctaatttc 30158472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 36037468 - 36037396
Alignment:
Q  56 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    |||||| || |||| |||||||||||||||||||||||||||||||||  ||  ||||||| |||||||||||    
T  36037468 acaacgtcgaaactctatcgatttattttctttattatgttgtttattcattgaatcatgtgtagctaatttc 36037396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 10884575 - 10884646
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||| || |||| ||| |||||||    
T  10884575 caacgacggaactttattggtttattttctttactatgttgtttaattctttgattatgtttagttaatttc 10884646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 56 - 127
Target Start/End: Complemental strand, 17532112 - 17532041
Alignment:
Q  56 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaattt 127  Q
    |||||||||||||| | ||| ||||||||||||| ||||||| ||||| |||| ||||||| ||||||||||    
T  17532112 acaacgacggaactctttcgctttattttctttactatgttgcttattgctttaatcatgtctagctaattt 17532041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 55032308 - 55032259
Alignment:
Q  77 tttattttctttattatgttgtttatttcttttatcatgtatagctaatt 126  Q
    ||||||||||||| ||||||||||||| |||||||||||| |||||||||    
T  55032308 tttattttctttactatgttgtttattccttttatcatgtctagctaatt 55032259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 2280120 - 2280049
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||||| | ||||| |||||||||||||  ||||||||| |||||||  |||||| |||||||||||    
T  2280120 caacgacggaattctatcggtttattttctttacaatgttgtttgtttctttattcatgtctagctaatttc 2280049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 9154434 - 9154500
Alignment:
Q  60 cgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 126  Q
    |||||||||||||||  |||||||| |||| |||||||||||| | ||| ||||||| |||||||||    
T  9154434 cgacggaactttatctgtttattttttttactatgttgtttatgtatttaatcatgtctagctaatt 9154500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 44508425 - 44508470
Alignment:
Q  58 aacgacggaactttatcgatttattttctttattatgttgtttatt 103  Q
    |||||||||| | ||||||||||||||||||| |||||||||||||    
T  44508425 aacgacggaattctatcgatttattttctttactatgttgtttatt 44508470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 26551211 - 26551275
Alignment:
Q  59 acgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagcta 123  Q
    ||||||||||  | || ||||| |||||||| |||||||||||||||||| ||||||| ||||||    
T  26551211 acgacggaacactttcaatttaatttctttactatgttgtttatttctttcatcatgtctagcta 26551275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 10107075 - 10107004
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    |||||||||||   ||| | ||||||||||||| ||||||||||| |||||| || |||| |||||||||||    
T  10107075 caacgacggaatcctattggtttattttctttactatgttgtttaattctttgattatgtctagctaatttc 10107004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 55035317 - 55035268
Alignment:
Q  77 tttattttctttattatgttgtttatttcttttatcatgtatagctaatt 126  Q
    ||||||||||||| || | |||||||| |||||||||||| |||||||||    
T  55035317 tttattttctttactacgctgtttattccttttatcatgtctagctaatt 55035268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 9392453 - 9392525
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttct 129  Q
    ||||||||||| | ||||| |||||||||||  |||||||||||  || ||| ||||||| |||||| |||||    
T  9392453 caacgacggaattctatcggtttattttcttctttatgttgtttgcttatttgatcatgtctagctagtttct 9392525  T

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Target: chr2 (Bit Score: 44; Significance: 2e-16; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 26365545 - 26365616
Alignment:
Q  56 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaattt 127  Q
    ||||||| | |||| ||||| |||||||| |||||||||||||||||| |||||||||||| ||||||||||    
T  26365545 acaacgatgaaactctatcggtttattttttttattatgttgtttattccttttatcatgtctagctaattt 26365616  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 29435365 - 29435432
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaa 124  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||| ||| ||||||| |||||||    
T  29435365 caacgacggaactctatcggtttattttctttactatgttgtttatttatttgatcatgtctagctaa 29435432  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 4577466 - 4577535
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 126  Q
    |||||||| | || ||||||||||||||||||| |||||||||||||||||| || |||| |||||||||    
T  4577466 caacgacgaagctctatcgatttattttctttactatgttgtttatttctttaattatgtctagctaatt 4577535  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 10600578 - 10600648
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaattt 127  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||| ||  ||| ||||||| ||||||||||    
T  10600578 caacgacggaactttatcggtttattttctttactatattgtttgttattttaatcatgtctagctaattt 10600648  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 38005674 - 38005604
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaattt 127  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||||||| |||| |  |||| ||||||||||    
T  38005674 caacgacggaactctatcggtttattttctttactatgttgtttattcctttaactatgtctagctaattt 38005604  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 15704475 - 15704403
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttct 129  Q
    |||||||| |||| ||||| ||||||||||||| |||||||||||||| ||| ||||||| ||| ||| ||||    
T  15704475 caacgacgaaactctatcggtttattttctttactatgttgtttatttatttgatcatgtctagttaaattct 15704403  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 15719729 - 15719670
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgt 116  Q
    |||||||| |||| ||||| ||||||||||||| |||||||||||||| ||| |||||||    
T  15719729 caacgacgaaactctatcggtttattttctttactatgttgtttatttatttgatcatgt 15719670  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 1503931 - 1503866
Alignment:
Q  60 cgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 126  Q
    ||||| |||| ||||||||||||||||| | |||||||||||||| ||| ||||||| |||||||||    
T  1503931 cgacgaaactctatcgatttattttctt-actatgttgtttatttatttaatcatgtctagctaatt 1503866  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 38325984 - 38326053
Alignment:
Q  58 aacgacggaactttatcgatttattttctttattatgttgtttatt-tcttttatcatgtatagctaatt 126  Q
    |||||||||| | ||||||||||||||||||| || |||||||||| | ||| ||||||| |||||||||    
T  38325984 aacgacggaattctatcgatttattttctttactacgttgtttattctttttaatcatgtctagctaatt 38326053  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 38326775 - 38326706
Alignment:
Q  58 aacgacggaactttatcgatttattttctttattatgttgtttatt-tcttttatcatgtatagctaatt 126  Q
    |||||||||| | ||||||||||||||||||| || |||||||||| | ||| ||||||| |||||||||    
T  38326775 aacgacggaattctatcgatttattttctttactacgttgtttattctttttaatcatgtctagctaatt 38326706  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 25873788 - 25873859
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||| ||||||||||| |||| ||||||  ||||||||||| ||| ||| || |||| |||||||||||    
T  25873788 caacgactgaactttatcggtttaatttcttctttatgttgtttgtttatttgattatgtctagctaatttc 25873859  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 1507135 - 1507070
Alignment:
Q  60 cgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 126  Q
    ||||| |||| ||||| ||||||||||| | |||||||||||||| ||| ||||||| |||||||||    
T  1507135 cgacgaaactctatcggtttattttctt-actatgttgtttatttatttaatcatgtctagctaatt 1507070  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 25870421 - 25870491
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaattt 127  Q
    ||||||| ||||||||||| |||| ||||||  ||||||||||| ||| ||| || |||| ||||||||||    
T  25870421 caacgaccgaactttatcggtttaatttcttctttatgttgtttgtttatttgattatgtctagctaattt 25870491  T

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Target: chr1 (Bit Score: 44; Significance: 2e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 37641479 - 37641550
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||| ||||| ||||| |||||||||||||||||||||||||||  ||| ||||||| |||||||||||    
T  37641479 caacgacagaactctatcggtttattttctttattatgttgtttattcgtttgatcatgtctagctaatttc 37641550  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 49715985 - 49716052
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaa 124  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||| ||| ||||||| |||||||    
T  49715985 caacgacggaactctatcggtttattttctttactatgttgtttatttatttgatcatgtctagctaa 49716052  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 49719468 - 49719535
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaa 124  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||| ||| ||||||| |||||||    
T  49719468 caacgacggaactctatcggtttattttctttactatgttgtttatttatttgatcatgtctagctaa 49719535  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 1950945 - 1950874
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||||||| ||| | ||||||||||||| ||||||||||| |||||| || |||| |||||||||||    
T  1950945 caacgacggaactctattggtttattttctttactatgttgtttaattctttgattatgtctagctaatttc 1950874  T

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Target: scaffold0360 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 2095 - 2164
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 126  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| |||||||  | |||| |||||||||    
T  2095 caacgacggaactctatcggtttattttctttattatgttgtttgtttctttattgatgtctagctaatt 2164  T

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Target: scaffold0062 (Bit Score: 37; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 53387 - 53315
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttct 129  Q
    |||||||| |||| ||||| ||||||||||||| |||||||||||||| ||| ||||||| ||| ||| ||||    
T  53387 caacgacgaaactctatcggtttattttctttactatgttgtttatttatttgatcatgtctagttaaattct 53315  T

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Target: scaffold0062; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 68286 - 68227
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgt 116  Q
    |||||||| |||| ||||| ||||||||||||| |||||||||||||| ||| |||||||    
T  68286 caacgacgaaactctatcggtttattttctttactatgttgtttatttatttgatcatgt 68227  T

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Target: scaffold0035 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 62148 - 62219
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||||||| |||||  ||||||||||||  ||||||||||||  ||| ||||||| |||||||||||    
T  62148 caacgacggaactctatcgggttattttctttaccatgttgtttattattttaatcatgtctagctaatttc 62219  T

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Target: scaffold0214 (Bit Score: 34; Significance: 0.0000000002; HSPs: 3)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 13222 - 13291
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 126  Q
    |||||||| | || ||||| ||||||||||||| |||||||||||||| ||| || |||| |||||||||    
T  13222 caacgacgaagctctatcggtttattttctttactatgttgtttatttttttaattatgtctagctaatt 13291  T

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Target: scaffold0214; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 19672 - 19741
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 126  Q
    |||||||| | || ||||| ||||||||||||| ||||||||||| |||||| || |||| |||||||||    
T  19672 caacgacgaagctctatcggtttattttctttactatgttgtttaattctttaattatgtctagctaatt 19741  T

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Target: scaffold0214; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 27238 - 27307
Alignment:
Q  57 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 126  Q
    |||||||| | || ||||| ||||||||||||| |||||||||||||| ||| || |||| |||||||||    
T  27238 caacgacgaagctctatcggtttattttctttactatgttgtttatttttttaattatgtctagctaatt 27307  T

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Target: scaffold0080 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 26819 - 26891
Alignment:
Q  56 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 128  Q
    ||||||||| |||| ||||| |||||||  |||| |||||||||||| ||||| ||||||| ||| |||||||    
T  26819 acaacgacgaaactctatcggtttatttcttttaatatgttgtttatctctttgatcatgtctaggtaatttc 26891  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 226961 - 227019
Alignment:
Q  50 aagcccacaacgacggaactttatcgatttattttctttattatgttgtttatttcttt 108  Q
    ||||| ||||||||| | || ||||| ||||||||||||| ||||||||||||| ||||    
T  226961 aagccgacaacgacgaagctctatcggtttattttctttactatgttgtttattccttt 227019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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