View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5854-8 (Length: 116)

Name: Solexa-NF5854-8
Description: NF5854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5854-8
Solexa-NF5854-8
[»] scaffold0038 (2 HSPs)
scaffold0038 (8-116)||(41128-41236)
scaffold0038 (16-56)||(25356-25396)
[»] chr6 (4 HSPs)
chr6 (8-116)||(28240966-28241074)
chr6 (13-89)||(28156506-28156582)
chr6 (15-89)||(28180058-28180132)
chr6 (16-56)||(28224858-28224898)


Alignment Details
Target: scaffold0038 (Bit Score: 101; Significance: 2e-50; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 41128 - 41236
Alignment:
Q  8 gaattactatttgaatttgaataatttaatcattcaatctgtttttattgttgttaagtttaatctgttttagaggcctaatgcggtggattaaggaaag 107  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41128 gaattactatttgaatttgaataatttaatcattcaatctgtgtttattgttgtaaagtttaatctgttttagaggcctaatgcggtggattaaggaaag 41227  T
Q  108 ttatggtgc 116  Q
    |||||||||    
T  41228 ttatggtgc 41236  T

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Target: scaffold0038; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 25356 - 25396
Alignment:
Q  16 atttgaatttgaataatttaatcattcaatctgtttttatt 56  Q
    |||||| ||||||||||| ||||||||||||||| ||||||    
T  25356 atttgagtttgaataattcaatcattcaatctgtgtttatt 25396  T

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Target: chr6 (Bit Score: 101; Significance: 2e-50; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 28240966 - 28241074
Alignment:
Q  8 gaattactatttgaatttgaataatttaatcattcaatctgtttttattgttgttaagtttaatctgttttagaggcctaatgcggtggattaaggaaag 107  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28240966 gaattactatttgaatttgaataatttaatcattcaatctgtgtttattgttgtaaagtttaatctgttttagaggcctaatgcggtggattaaggaaag 28241065  T
Q  108 ttatggtgc 116  Q
    |||||||||    
T  28241066 ttatggtgc 28241074  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 28156506 - 28156582
Alignment:
Q  13 actatttgaatttgaataatttaatcattcaatctgtttttattgttgttaagtttaatctgttttagaggcctaat 89  Q
    ||||| ||||||| ||||||| ||||||||||||||| ||||||||||| ||||||  |||||||||||||| ||||    
T  28156506 actatgtgaatttaaataattcaatcattcaatctgtctttattgttgtgaagtttcctctgttttagaggcataat 28156582  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 28180058 - 28180132
Alignment:
Q  15 tatttgaatttgaataatttaatcattcaatctgtttttattgttgttaagtttaatctgttttagaggcctaat 89  Q
    ||||||| ||||||||||| ||||||| ||| ||| ||||||||||| ||||||  | ||||| |||||||||||    
T  28180058 tatttgagtttgaataattcaatcattaaatatgtgtttattgttgtgaagtttcctttgtttaagaggcctaat 28180132  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 28224858 - 28224898
Alignment:
Q  16 atttgaatttgaataatttaatcattcaatctgtttttatt 56  Q
    |||||| ||||||||||| ||||||||||||||| ||||||    
T  28224858 atttgagtttgaataattcaatcattcaatctgtgtttatt 28224898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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