View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5855-12 (Length: 144)
Name: Solexa-NF5855-12
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5855-12 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 116; Significance: 2e-59; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 8992081 - 8991942
Alignment:
| Q |
5 |
agagactataactaaatactgtctcaaagaaattacagcagatggaagctgtaaagatcaaataaatgattgtagagaagaattcatgtctggagtagga |
104 |
Q |
| |
|
||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8992081 |
agagactgtaactaaatattgtctcaaagagattacagcagatggaagctgtaaagatgaattaaatgattgtagagaagaattcatgtctggagtagga |
8991982 |
T |
|
| Q |
105 |
tcatggaccatggctcaagattgtcaatgtcaacaacttt |
144 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8991981 |
tcatggaccatggctcaggattgtcaatgtcaacaacttt |
8991942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 9016528 - 9016389
Alignment:
| Q |
5 |
agagactataactaaatactgtctcaaagaaattacagcagatggaagctgtaaagatcaaataaatgattgtagagaagaattcatgtctggagtagga |
104 |
Q |
| |
|
||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9016528 |
agagactgtaactaaatattgtctcaaagagattacagcagatggaagctgtaaagatgaattaaatgattgtagagaagaattcatgtctggagtagga |
9016429 |
T |
|
| Q |
105 |
tcatggaccatggctcaagattgtcaatgtcaacaacttt |
144 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9016428 |
tcatggaccatggctcaggattgtcaatgtcaacaacttt |
9016389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 8940972 - 8941045
Alignment:
| Q |
71 |
tgattgtagagaagaattcatgtctggagtaggatcatggaccatggctcaagattgtcaatgtcaacaacttt |
144 |
Q |
| |
|
|||||||| ||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8940972 |
tgattgtacagatgaattcattaatggagtaggatcatggaccatggctaaagattgtcaatgtcaacaacttt |
8941045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 8984271 - 8984230
Alignment:
| Q |
100 |
taggatcatggaccatggctcaagattgtcaatgtcaacaac |
141 |
Q |
| |
|
||||||| ||||||||| ||||||||||| |||||||||||| |
|
|
| T |
8984271 |
taggatcttggaccatgactcaagattgtgaatgtcaacaac |
8984230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University