View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5855-16 (Length: 140)

Name: Solexa-NF5855-16
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5855-16
Solexa-NF5855-16
[»] chr8 (7 HSPs)
chr8 (1-111)||(27768890-27769002)
chr8 (1-83)||(9305230-9305313)
chr8 (1-83)||(35163040-35163124)
chr8 (1-83)||(29525865-29525950)
chr8 (1-83)||(41774939-41775023)
chr8 (1-82)||(30233800-30233883)
chr8 (1-47)||(36676335-36676382)
[»] chr2 (3 HSPs)
chr2 (1-83)||(18058823-18058907)
chr2 (13-83)||(39822906-39822977)
chr2 (1-69)||(5737261-5737330)
[»] chr5 (6 HSPs)
chr5 (1-83)||(43146344-43146427)
chr5 (4-83)||(29668518-29668598)
chr5 (1-83)||(20256949-20257034)
chr5 (1-72)||(24147111-24147184)
chr5 (13-83)||(38088988-38089058)
chr5 (1-83)||(2134749-2134833)
[»] chr3 (4 HSPs)
chr3 (1-83)||(49323175-49323258)
chr3 (1-83)||(3984485-3984568)
chr3 (1-83)||(35637216-35637300)
chr3 (1-70)||(2663289-2663360)
[»] chr1 (6 HSPs)
chr1 (1-70)||(36384317-36384387)
chr1 (4-77)||(41677789-41677864)
chr1 (1-83)||(47459114-47459195)
chr1 (1-83)||(43824247-43824332)
chr1 (4-83)||(19563408-19563487)
chr1 (14-57)||(37028636-37028679)
[»] chr4 (3 HSPs)
chr4 (1-83)||(50470055-50470139)
chr4 (13-83)||(31799287-31799358)
chr4 (1-56)||(42171231-42171286)
[»] chr7 (2 HSPs)
chr7 (4-83)||(24879081-24879162)
chr7 (4-83)||(48065001-48065082)


Alignment Details
Target: chr8 (Bit Score: 69; Significance: 2e-31; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 27768890 - 27769002
Alignment:
Q  1 aagaaccacccac-accatttatgtttccatttacttaattaaaatcatactttttta-aagttaataacatgtctcatatttttgacctttattgcaat 98  Q
    ||||||||||||| ||||||||| ||||||||| |||||||||||||||| ||||||  ||||||||||||||| ||||||||||  |||||||||||||    
T  27768890 aagaaccacccaccaccatttatatttccatttccttaattaaaatcatatttttttttaagttaataacatgtgtcatatttttcgcctttattgcaat 27768989  T
Q  99 tttctgactttct 111  Q
    |||||||||||||    
T  27768990 tttctgactttct 27769002  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 9305230 - 9305313
Alignment:
Q  1 aagaaccacccac-accatttatgtttccatttacttaattaaaatcatacttttttaaagttaataacatgtctcatattttt 83  Q
    ||||||||||||| |||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  9305230 aagaaccacccaccaccatttatgtttttatttccttaattaaaatcacacttttttaaagttaataacatgtgtcatattttt 9305313  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 35163124 - 35163040
Alignment:
Q  1 aagaaccacccac-accatttatgtttccatttacttaattaaaatcatac-ttttttaaagttaataacatgtctcatattttt 83  Q
    |||||| |||||| ||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||| ||||||||||    
T  35163124 aagaactacccaccaccatttatgtttccatttccttaattaaaatcacactttttttaaagttaataacatgtgtcatattttt 35163040  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 29525865 - 29525950
Alignment:
Q  1 aagaaccacccac-accatttatgtttccatttacttaattaaaatcata--cttttttaaagttaataacatgtctcatattttt 83  Q
    ||||||||| ||| ||||||||||||||||||| |||||||||||||| |  ||||||||||||||||||||||| ||||||||||    
T  29525865 aagaaccacacaccaccatttatgtttccatttccttaattaaaatcacactcttttttaaagttaataacatgtgtcatattttt 29525950  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 41774939 - 41775023
Alignment:
Q  1 aagaaccacccac-accatttatgtttccatttacttaattaaaatcatac-ttttttaaagttaataacatgtctcatattttt 83  Q
    |||||||| |||| ||||||||||||||||||| |||||||||||| | || ||||||||||| |||||||||| |||| |||||    
T  41774939 aagaaccatccaccaccatttatgtttccatttccttaattaaaataacactttttttaaagtaaataacatgtgtcattttttt 41775023  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 30233800 - 30233883
Alignment:
Q  1 aagaaccacccac-accatttatgtttccatttacttaattaaaatcatac-ttttttaaagttaataacatgtctcatatttt 82  Q
    |||| |||||||| ||||||||||||| |||||  ||||||||||||| || |||||||||||||||||||||| |||| ||||    
T  30233800 aagacccacccaccaccatttatgttttcatttcattaattaaaatcacactttttttaaagttaataacatgtgtcatttttt 30233883  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36676382 - 36676335
Alignment:
Q  1 aagaaccaccca-caccatttatgtttccatttacttaattaaaatca 47  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||    
T  36676382 aagaaccacccatcaccatttatgtttccatttccttaattaaaatca 36676335  T

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Target: chr2 (Bit Score: 57; Significance: 3e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 18058907 - 18058823
Alignment:
Q  1 aagaaccacccac-accatttatgtttccatttacttaattaaaatcatacttt-tttaaagttaataacatgtctcatattttt 83  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  18058907 aagaaccacccaccaccatttatgtttccatttccttaattaaaatcacactttatttaaagttaataacatgtgtcatattttt 18058823  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 39822906 - 39822977
Alignment:
Q  13 caccatttatgtttccatttacttaattaaaatcatac-ttttttaaagttaataacatgtctcatattttt 83  Q
    |||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||| ||||||||||    
T  39822906 caccatttatgtttccattttcttaattaaaatcacactttttttaaatttaataacatgtgtcatattttt 39822977  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 5737330 - 5737261
Alignment:
Q  1 aagaaccacccac-accatttatgtttccatttacttaattaaaatcatacttttttaaagttaataaca 69  Q
    ||||||||||||| |||||||| |||||||||| |||||| |||||||  ||||||||||||||||||||    
T  5737330 aagaaccacccaccaccatttacgtttccatttccttaatgaaaatcactcttttttaaagttaataaca 5737261  T

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Target: chr5 (Bit Score: 56; Significance: 1e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 43146344 - 43146427
Alignment:
Q  1 aagaaccacccac-accatttatgtttccatttacttaattaaaatcatacttttttaaagttaataacatgtctcatattttt 83  Q
    |||| |||||||| |||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  43146344 aagacccacccaccaccatttacgtttccatttccttaattaaaatcacacttttttaaagttaataacatgtgtcatattttt 43146427  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 29668518 - 29668598
Alignment:
Q  4 aaccacccacaccatttatgtttccatttacttaattaaaatcatac-ttttttaaagttaataacatgtctcatattttt 83  Q
    |||||||| ||| |||||||||||||||| |||||||||||||| || |||||||||||||| ||||||| ||||||||||    
T  29668518 aaccacccccactatttatgtttccatttccttaattaaaatcacactttttttaaagttaacaacatgtgtcatattttt 29668598  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 20257034 - 20256949
Alignment:
Q  1 aagaaccacccac-accatttatgtttccatttacttaattaaaatcatactttttt--aaagttaataacatgtctcatattttt 83  Q
    ||||||||||||| ||||||||||||||||||| ||||  |||||||| ||||||||  |||||||||||||||| ||||||||||    
T  20257034 aagaaccacccaccaccatttatgtttccatttccttagctaaaatcacacttttttttaaagttaataacatgtgtcatattttt 20256949  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 24147184 - 24147111
Alignment:
Q  1 aagaaccaccca-caccatttatgtttccatttacttaattaaaatcatac-ttttttaaagttaataacatgt 72  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||    
T  24147184 aagaaccaccgatcaccatttatgtttccatttacttaattaaaatcacactttttttaaacttaataacatgt 24147111  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 38088988 - 38089058
Alignment:
Q  13 caccatttatgtttccatttacttaattaaaatcatacttttttaaagttaataacatgtctcatattttt 83  Q
    |||||||||||||| ||||| |||||||||||||| | |||||| || |||||||||||| ||||||||||    
T  38088988 caccatttatgttttcatttccttaattaaaatcacattttttttaaattaataacatgtgtcatattttt 38089058  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 2134749 - 2134833
Alignment:
Q  1 aagaaccacccac-accatttatgtttccatttacttaattaaaatcatac-ttttttaaagttaataacatgtctcatattttt 83  Q
    ||||||||||||| ||||||||||||| ||||| ||| |||||||||| || |||||||||||||| ||||||| |||| |||||    
T  2134749 aagaaccacccaccaccatttatgttttcatttccttgattaaaatcacactttttttaaagttaagaacatgtgtcattttttt 2134833  T

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Target: chr3 (Bit Score: 56; Significance: 1e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 49323175 - 49323258
Alignment:
Q  1 aagaaccacccac-accatttatgtttccatttacttaattaaaatcatacttttttaaagttaataacatgtctcatattttt 83  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||| |||| |||||    
T  49323175 aagaaccacccaccaccatttatgtttccatttccttaattaaaatcacacttttttaaagttaacaacatgtgtcatcttttt 49323258  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 3984568 - 3984485
Alignment:
Q  1 aagaaccacccac-accatttatgtttccatttacttaattaaaatcatacttttttaaagttaataacatgtctcatattttt 83  Q
    ||||||||||||| |||||||||||||| |||| |||| ||||||||| |||||||||||||||||||||||| |||| |||||    
T  3984568 aagaaccacccaccaccatttatgtttctatttccttagttaaaatcacacttttttaaagttaataacatgtgtcattttttt 3984485  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 35637216 - 35637300
Alignment:
Q  1 aagaaccacccac-accatttatgtttccatttacttaattaaaatcatactttt-ttaaagttaataacatgtctcatattttt 83  Q
    ||||||||||||| || |||||||||||||||| || ||||||||||| |||||| |||||||||||||||||| ||||||||||    
T  35637216 aagaaccacccaccactatttatgtttccatttcctaaattaaaatcacactttttttaaagttaataacatgtgtcatattttt 35637300  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 2663360 - 2663289
Alignment:
Q  1 aagaaccacccac-accatttatgtttccatttacttaattaaaatcatac-ttttttaaagttaataacat 70  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||    
T  2663360 aagaaccacccaccaccatttatgtttccatttccttaattaaaatcacactttttttaaagttaataacat 2663289  T

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Target: chr1 (Bit Score: 51; Significance: 1e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 36384317 - 36384387
Alignment:
Q  1 aagaaccacccac-accatttatgtttccatttacttaattaaaatcatacttttttaaagttaataacat 70  Q
    ||||||||||||| | ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  36384317 aagaaccacccaccatcatttatgtttccatttccttaattaaaatcacacttttttaaagttaataacat 36384387  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 41677864 - 41677789
Alignment:
Q  4 aaccacccac-accatttatgtttccatttacttaattaaaatcata-cttttttaaagttaataacatgtctcat 77  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||| ||||    
T  41677864 aaccacccaccaccatttatgtttccatttccttaattaaaatcatatattttttaaagttaataacatgtatcat 41677789  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 47459114 - 47459195
Alignment:
Q  1 aagaaccacccacaccatttatgtttccatttacttaattaaaatcatacttttttaaagttaataacatgtctcatattttt 83  Q
    ||||||||||  || ||||||||||||||||| ||||||||||||||   |||||||||||||||||||||| |||| |||||    
T  47459114 aagaaccaccatcatcatttatgtttccatttccttaattaaaatca-ctttttttaaagttaataacatgtgtcattttttt 47459195  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 43824332 - 43824247
Alignment:
Q  1 aagaaccacccac-accatttatgtttccatttacttaattaaaatcatac---ttttttaaagttaataacatgtctcatattttt 83  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||||| ||   |||||||||||||||||||||| |||| |||||    
T  43824332 aagaaccacccaccaccatttatgttttcatttccttaattaaaatca-acattttttttaaagttaataacatgtgtcattttttt 43824247  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 19563487 - 19563408
Alignment:
Q  4 aaccacccac-accatttatgtttccatttacttaattaaaatcatactttttt-aaagttaataacatgtctcatattttt 83  Q
    |||||||||| ||||||||||||| ||||| |||||||||||||  |||||||| ||||||||||| |||| ||||||||||    
T  19563487 aaccacccaccaccatttatgttttcatttccttaattaaaatc--acttttttaaaagttaataatatgtgtcatattttt 19563408  T

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Target: chr1; HSP #6
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 37028679 - 37028636
Alignment:
Q  14 accatttatgtttccatttacttaattaaaatcatactttttta 57  Q
    ||||||| |||||| |||| |||||||||||||| |||||||||    
T  37028679 accatttttgtttctatttccttaattaaaatcacactttttta 37028636  T

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Target: chr4 (Bit Score: 49; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 50470139 - 50470055
Alignment:
Q  1 aagaaccacccac-accatttatgtttccatttacttaattaaaatcatactttttt-aaagttaataacatgtctcatattttt 83  Q
    ||||||||||||| ||||||||||||||||||| ||||| |||||| | |||||||| |||||||||||||||| ||||||||||    
T  50470139 aagaaccacccaccaccatttatgtttccatttccttaaataaaattacactttttttaaagttaataacatgtgtcatattttt 50470055  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 31799287 - 31799358
Alignment:
Q  13 caccatttatgtttccatttacttaattaaaatcatac-ttttttaaagttaataacatgtctcatattttt 83  Q
    |||||||||||||| |||||  ||||||||||||| || |||||||||||||||||||||| |||| |||||    
T  31799287 caccatttatgttttcatttctttaattaaaatcacactttttttaaagttaataacatgtgtcattttttt 31799358  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 42171231 - 42171286
Alignment:
Q  1 aagaaccacccacaccatttatgtttccatttacttaattaaaatcatactttttt 56  Q
    ||||||| ||||||||||| |||||| ||||| |||||||||||||| ||||||||    
T  42171231 aagaaccgcccacaccattcatgttttcattttcttaattaaaatcacactttttt 42171286  T

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Target: chr7 (Bit Score: 46; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 24879081 - 24879162
Alignment:
Q  4 aaccacccac-accatttatgtttccatttacttaattaaaatcata-cttttttaaagttaataacatgtctcatattttt 83  Q
    |||||||||| ||||||||||||||||||| |||||||||||||| |  |||||||||||||||||||| | ||||||||||    
T  24879081 aaccacccaccaccatttatgtttccatttccttaattaaaatcacattttttttaaagttaataacatatgtcatattttt 24879162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 48065001 - 48065082
Alignment:
Q  4 aaccacccac-accatttatgtttccatttacttaattaaaatcatactttt-ttaaagttaataacatgtctcatattttt 83  Q
    |||||||||| ||| ||||||||||||||| || || |||||||| |||||| |||||||||||||||||| ||||||||||    
T  48065001 aaccacccaccaccgtttatgtttccatttcctcaagtaaaatcaaactttttttaaagttaataacatgtgtcatattttt 48065082  T

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