View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5855-17 (Length: 138)
Name: Solexa-NF5855-17
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5855-17 |
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Alignment Details
Target: chr1 (Bit Score: 79; Significance: 3e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 31257626 - 31257528
Alignment:
| Q |
8 |
aaacttgtcgaacaatcaaacaataataacttaagaaatcacaaccttaattgtaatcctatacgatcgcaacctatcaacatgtttatgtatgtgttg |
106 |
Q |
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| T |
31257626 |
aaactcgtcgaacaatcaaacaatgataacttaagaaattacaaccttaattgtaatcctatacaatcacaacctatcaacatgtttatgtatgtgttg |
31257528 |
T |
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Target: chr1; HSP #2
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 31257741 - 31257692
Alignment:
| Q |
22 |
atcaaacaataataacttaagaaatcacaaccttaattgtaatcctatac |
71 |
Q |
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| T |
31257741 |
atcaaacaataataacttaagaaatcacaaccttaattgtaatcctatac |
31257692 |
T |
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