View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5855-18 (Length: 138)
Name: Solexa-NF5855-18
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5855-18 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 2e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 2e-65
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 8636962 - 8636825
Alignment:
| Q |
1 |
gacattattcacttattttcacttgcatctccgacattaccaacttaatgtcactttagtccatatcactaccaacaaaggaacggatttgattaacatt |
100 |
Q |
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| T |
8636962 |
gacattattcacttattttcacttgcatctccgacattaccaacttaatgtcactttagtccatatcactaccaacaaaggaacggatttgattagcatt |
8636863 |
T |
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| Q |
101 |
ttgcaatttcaaggatcactttggaatattattaatgt |
138 |
Q |
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| T |
8636862 |
ttgcaatttcaaggatcactttggattactattaatgt |
8636825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 21873581 - 21873693
Alignment:
| Q |
1 |
gacattattcacttattttcacttgcatctccgacattaccaacttaatgtcactttagtccatatcactaccaacaaaggaacggatttgattaacatt |
100 |
Q |
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| T |
21873581 |
gacattattcacttagtttccaattcatccctgatattaccaatttaatgtcattctagtccctacaaataccaatagaggaacgagtttgattaaaatt |
21873680 |
T |
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| Q |
101 |
ttgcaatttcaag |
113 |
Q |
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| T |
21873681 |
ttgcaatttcaag |
21873693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000003; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 9078337 - 9078278
Alignment:
| Q |
70 |
taccaacaaaggaacggatttgattaacattttgcaatttcaaggatcactttggaatat |
129 |
Q |
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| T |
9078337 |
taccaatagagggacgaatttgattaaaattttgcaatttcgaggatcattttggaatat |
9078278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 7424293 - 7424247
Alignment:
| Q |
92 |
attaacattttgcaatttcaaggatcactttggaatattattaatgt |
138 |
Q |
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| T |
7424293 |
attaacattttgcaatttcagggatcattttgaaatattgttaatgt |
7424247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 21496460 - 21496420
Alignment:
| Q |
90 |
tgattaacattttgcaatttcaaggatcactttggaatatt |
130 |
Q |
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| T |
21496460 |
tgattaacattttgcaatttcagggatcattttgaaatatt |
21496420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 44139328 - 44139288
Alignment:
| Q |
87 |
atttgattaacattttgcaatttcaaggatcactttggaat |
127 |
Q |
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| T |
44139328 |
atttgattaacattttgcaatttcaagtatcattgtggaat |
44139288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 54069319 - 54069276
Alignment:
| Q |
87 |
atttgattaacattttgcaatttcaaggatcactttggaatatt |
130 |
Q |
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| T |
54069319 |
atttgattaatattttgcaatttcaaggaaaattttggaatatt |
54069276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 32702746 - 32702696
Alignment:
| Q |
3 |
cattattcacttattttcacttgcatctccgacattaccaacttaatgtca |
53 |
Q |
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| T |
32702746 |
cattattctcttagtttcaaatgcatctccgacattaccaacttattgtca |
32702696 |
T |
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Target: chr6 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 132
Target Start/End: Original strand, 14558440 - 14558483
Alignment:
| Q |
89 |
ttgattaacattttgcaatttcaaggatcactttggaatattat |
132 |
Q |
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| T |
14558440 |
ttgattaacattttgcaaattcagggatcattttgaaatattat |
14558483 |
T |
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